Difference between revisions of "GCVP-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-O-ACETTRAN-RXN SERINE-O-ACETTRAN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Bac...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] == * direction: ** REVERSIBLE * common name: ** glycine dehydrogenase (decarboxy...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-O-ACETTRAN-RXN SERINE-O-ACETTRAN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Bacterial transferase hexapeptide repeat
+
** glycine dehydrogenase (decarboxylating)
−
** Trimeric LpxA-like
+
** Glycine dehydrogenase (decarboxylating)
−
** Serine acetyltransferase, N-terminal
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.30 EC-2.3.1.30]
+
** [http://enzyme.expasy.org/EC/1.4.4.2 EC-1.4.4.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ACETYL-COA]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[ACETYLSERINE]][c] '''+''' 1 [[CO-A]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 acetyl-CoA[c] '''+''' 1 L-serine[c] '''=>''' 1 O-acetyl-L-serine[c] '''+''' 1 coenzyme A[c]
+
** 1 H+[c] '''+''' 1 glycine[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''<=>''' 1 CO2[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-22_002810]]
+
* Gene: [[Ec-07_004110]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
−
* Gene: [[Ec-00_004310]]
+
* Gene: [[Ec-23_004150]]
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-aragem]]
+
−
* Gene: [[Ec-24_003520]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-01_001610]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[CYSTSYN-PWY]], L-cysteine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=CYSTSYN-PWY CYSTSYN-PWY]
+
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-SYN2-PWY GLYCINE-SYN2-PWY]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7274]], D-cycloserine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7274 PWY-7274]
+
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6936]], seleno-amino acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24560 24560]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00586 R00586]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q39533 Q39533]
+
** [http://www.uniprot.org/uniprot/P26969 P26969]
−
** [http://www.uniprot.org/uniprot/Q06750 Q06750]
+
** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
−
** [http://www.uniprot.org/uniprot/P71405 P71405]
+
** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
−
** [http://www.uniprot.org/uniprot/Q9JR86 Q9JR86]
+
** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
−
** [http://www.uniprot.org/uniprot/Q9PPF6 Q9PPF6]
+
** [http://www.uniprot.org/uniprot/P23378 P23378]
−
** [http://www.uniprot.org/uniprot/P23145 P23145]
+
** [http://www.uniprot.org/uniprot/P33195 P33195]
−
** [http://www.uniprot.org/uniprot/Q9CEI8 Q9CEI8]
+
** [http://www.uniprot.org/uniprot/O80988 O80988]
−
** [http://www.uniprot.org/uniprot/P43886 P43886]
+
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
−
** [http://www.uniprot.org/uniprot/P32003 P32003]
+
** [http://www.uniprot.org/uniprot/O32915 O32915]
−
** [http://www.uniprot.org/uniprot/P29847 P29847]
+
** [http://www.uniprot.org/uniprot/O22575 O22575]
−
** [http://www.uniprot.org/uniprot/Q42588 Q42588]
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/Q39218 Q39218]
+
{{#set: common name=glycine dehydrogenase (decarboxylating)}}
−
** [http://www.uniprot.org/uniprot/Q42538 Q42538]
+
{{#set: common name=Glycine dehydrogenase (decarboxylating)}}
−
** [http://www.uniprot.org/uniprot/P74089 P74089]
+
{{#set: ec number=EC-1.4.4.2}}
−
** [http://www.uniprot.org/uniprot/Q8W2B8 Q8W2B8]
+
{{#set: gene associated=Ec-07_004110|Ec-23_004150}}
−
** [http://www.uniprot.org/uniprot/Q8S895 Q8S895]
+
{{#set: in pathway=GLYCINE-SYN2-PWY|GLYCLEAV-PWY}}
−
** [http://www.uniprot.org/uniprot/P93544 P93544]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/O69218 O69218]
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
** [http://www.uniprot.org/uniprot/O32979 O32979]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P0A9D4 P0A9D4]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=Bacterial transferase hexapeptide repeat}}
+
−
{{#set: common name=Trimeric LpxA-like}}
+
−
{{#set: common name=Serine acetyltransferase, N-terminal}}
+
−
{{#set: ec number=EC-2.3.1.30}}
+
−
{{#set: gene associated=Ec-22_002810|Ec-00_004310|Ec-24_003520|Ec-01_001610}}
+
−
{{#set: in pathway=CYSTSYN-PWY|PWY-7274|PWY-6936}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:28, 21 March 2018

Reaction GCVP-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • glycine dehydrogenase (decarboxylating)
    • Glycine dehydrogenase (decarboxylating)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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