Difference between revisions of "RXN-13162"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CITSYN-RXN CITSYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/E...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13162 RXN-13162] == * direction: ** LEFT-TO-RIGHT * common name: ** Isopentenyl-diphosphate del...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CITSYN-RXN CITSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13162 RXN-13162] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.3.16 EC-2.3.3.16]
+
** [http://enzyme.expasy.org/EC/2.5.1.21 EC-2.5.1.21]
−
** [http://enzyme.expasy.org/EC/2.3.3.1 EC-2.3.3.1]
+
 
* Synonym(s):
 
* Synonym(s):
−
** Condensing enzyme
 
−
** citrate synthesis
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ACETYL-COA]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CIT]][c]
+
** 2 [[FARNESYL-PP]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[SQUALENE]][c] '''+''' 2 [[PPI]][c] '''+''' 1 [[NAD-P-OR-NOP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 acetyl-CoA[c] '''+''' 1 H2O[c] '''+''' 1 oxaloacetate[c] '''=>''' 1 coenzyme A[c] '''+''' 1 H+[c] '''+''' 1 citrate[c]
+
** 2 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 NAD(P)H[c] '''+''' 1 H+[c] '''=>''' 1 squalene[c] '''+''' 2 diphosphate[c] '''+''' 1 NAD(P)+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-11_001030]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
+
* [[PWY-5670]], epoxysqualene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5670 PWY-5670]
−
** '''8''' reactions found over '''16''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
+
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
+
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
+
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
+
−
** '''11''' reactions found over '''18''' reactions in the full pathway
+
−
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
+
−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
+
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
+
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16845 16845]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32302 32302]
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32296 32296]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00351 R00351]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06223 R06223]
−
* PIR:
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43936 A43936]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81200 A81200]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81139 B81139]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64760 E64760]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86708 F86708]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69600 G69600]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81265 G81265]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39506 I39506]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40044 I40044]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40380 I40380]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40717 I40717]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JQ1392 JQ1392]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PQ0046 PQ0046]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41527 S41527]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41563 S41563]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S42370 S42370]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44316 S44316]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52814 S52814]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02390 T02390]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09334 T09334]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44615 T44615]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBY YKBY]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBYC YKBYC]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKEC YKEC]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMUM YKMUM]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMY YKMY]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPG YKPG]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPSCA YKPSCA]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKQPC YKQPC]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKRECP YKRECP]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKYT YKYT]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9JRA5 Q9JRA5]
+
−
** [http://www.uniprot.org/uniprot/Q9JQX0 Q9JQX0]
+
−
** [http://www.uniprot.org/uniprot/P31660 P31660]
+
−
** [http://www.uniprot.org/uniprot/Q9CHQ6 Q9CHQ6]
+
−
** [http://www.uniprot.org/uniprot/P39120 P39120]
+
−
** [http://www.uniprot.org/uniprot/Q9PLZ5 Q9PLZ5]
+
−
** [http://www.uniprot.org/uniprot/P20902 P20902]
+
−
** [http://www.uniprot.org/uniprot/P51033 P51033]
+
−
** [http://www.uniprot.org/uniprot/P39119 P39119]
+
−
** [http://www.uniprot.org/uniprot/P42457 P42457]
+
−
** [http://www.uniprot.org/uniprot/P18789 P18789]
+
−
** [http://www.uniprot.org/uniprot/P20903 P20903]
+
−
** [http://www.uniprot.org/uniprot/P51038 P51038]
+
−
** [http://www.uniprot.org/uniprot/P34085 P34085]
+
−
** [http://www.uniprot.org/uniprot/P34575 P34575]
+
−
** [http://www.uniprot.org/uniprot/Q43175 Q43175]
+
−
** [http://www.uniprot.org/uniprot/P43635 P43635]
+
−
** [http://www.uniprot.org/uniprot/O24259 O24259]
+
−
** [http://www.uniprot.org/uniprot/O32705 O32705]
+
−
** [http://www.uniprot.org/uniprot/P00890 P00890]
+
−
** [http://www.uniprot.org/uniprot/P08679 P08679]
+
−
** [http://www.uniprot.org/uniprot/P0ABH7 P0ABH7]
+
−
** [http://www.uniprot.org/uniprot/Q47237 Q47237]
+
−
** [http://www.uniprot.org/uniprot/P20115 P20115]
+
−
** [http://www.uniprot.org/uniprot/P26491 P26491]
+
−
** [http://www.uniprot.org/uniprot/P00889 P00889]
+
−
** [http://www.uniprot.org/uniprot/P20901 P20901]
+
−
** [http://www.uniprot.org/uniprot/P09948 P09948]
+
−
** [http://www.uniprot.org/uniprot/P21553 P21553]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.3.3.16}}
+
{{#set: common name=Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs}}
−
{{#set: ec number=EC-2.3.3.1}}
+
{{#set: ec number=EC-2.5.1.21}}
−
{{#set: common name=Condensing enzyme|citrate synthesis}}
+
{{#set: gene associated=Ec-11_001030}}
−
{{#set: in pathway=FERMENTATION-PWY|PWY-5750|PWY-5913|PWY-5690|PWY-6549|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|REDCITCYC|PWY-7254|PWY-7124|PWY66-398|TCA}}
+
{{#set: in pathway=PWY-5670}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:15, 21 March 2018

Reaction RXN-13162

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5670, epoxysqualene biosynthesis: PWY-5670
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-13162&oldid=25603"