Difference between revisions of "RXNN-404"

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(Created page with "Category:Gene == Gene Ec-07_002880 == * left end position: ** 3086051 * transcription direction: ** POSITIVE * right end position: ** 3098285 * centisome position: ** 39.9...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNN-404 RXNN-404] == * direction: ** LEFT-TO-RIGHT * common name: ** Amidase * ec number: ** [http...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-07_002880 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNN-404 RXNN-404] ==
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* left end position:
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* direction:
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** 3086051
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Amidase
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* right end position:
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* ec number:
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** 3098285
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** [http://enzyme.expasy.org/EC/3.5.1.4 EC-3.5.1.4]
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* centisome position:
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** 39.962177   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0261_0033
 
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** Esi0261_0033
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[2.7.10.1-RXN]]
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* With identifiers:
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** 1 [[WATER]][c] '''+''' 1 [[CPD-237]][c] '''=>''' 1 [[INDOLE_ACETATE_AUXIN]][c] '''+''' 1 [[AMMONIUM]][c]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 indole-3-acetamide[c] '''=>''' 1 indole-3-acetate[c] '''+''' 1 ammonium[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-02_005910]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-06_009020]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* Reaction: [[PROTEIN-KINASE-RXN]]
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== Pathways  ==
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* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
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** '''2''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-5025]], indole-3-acetate biosynthesis IV (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5025 PWY-5025]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-3161]], indole-3-acetate biosynthesis III (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3161 PWY-3161]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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== External links  ==
 
== External links  ==
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{{#set: left end position=3086051}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34371 34371]
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{{#set: right end position=3098285}}
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* LIGAND-RXN:
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{{#set: centisome position=39.962177    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03096 R03096]
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{{#set: common name=Esi_0261_0033|Esi0261_0033}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=2.7.10.1-RXN|PROTEIN-KINASE-RXN}}
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{{#set: common name=Amidase}}
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{{#set: ec number=EC-3.5.1.4}}
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{{#set: gene associated=Ec-02_005910|Ec-06_009020}}
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{{#set: in pathway=PWY-581|PWY-5025|PWY-3161}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:30, 21 March 2018

Reaction RXNN-404

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Amidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-581, indole-3-acetate biosynthesis II: PWY-581
    • 2 reactions found over 14 reactions in the full pathway
  • PWY-5025, indole-3-acetate biosynthesis IV (bacteria): PWY-5025
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-3161, indole-3-acetate biosynthesis III (bacteria): PWY-3161
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXNN-404&oldid=27400"