Difference between revisions of "PWY-7401"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Aldolase-type TIM barrel...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** Aldolase-type TIM barrel
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** crotonate fermentation (to acetate and cyclohexane carboxylate)
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** Indole-3-glycerol phosphate synthase
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** FIST domain, N-terminal
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** indole-3-glycerol-phosphate synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''16''' reactions in the full pathway
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** 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c]
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 H2O[c] '''+''' 1 CO2[c] '''+''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c]
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*** [[Ec-26_003940]]
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*** [[Ec-24_000870]]
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== Genes associated with this reaction  ==
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*** [[Ec-22_002850]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* Gene: [[Ec-08_003030]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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*** Assignment: EC-NUMBER
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* [[RXN-11662]]
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* Gene: [[Ec-03_003850]]
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** 2 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-19_005290]]
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*** Assignment: EC-NUMBER
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*** [[Ec-14_006530]]
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* Gene: [[Ec-11_002820]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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*** [[orthology-aragem]]
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** Source: [[orthology-aragem]]
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* [[RXN-11667]]
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* Gene: [[Ec-08_003020]]
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** 2 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-17_000320]]
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*** Assignment: GO-TERM
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*** [[Ec-14_006530]]
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* Gene: [[Ec-27_004020]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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*** [[orthology-aragem]]
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== Pathways  ==
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* [[RXN-8032]]
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** 1 associated gene(s):
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[Ec-25_001550]]
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* Category: [[orthology]]
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*** [[orthology-aragem]]
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** Source: [[orthology-aragem]]
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== Reaction(s) not found ==
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.259-RXN 1.1.1.259-RXN]
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.100-RXN 4.2.1.100-RXN]
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUTACONYL-COA-DECARBOXYLASE-RXN GLUTACONYL-COA-DECARBOXYLASE-RXN]
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUTARYL-COA-DEHYDROG-RXN GLUTARYL-COA-DEHYDROG-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=HADTHAUERA-RXN HADTHAUERA-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=OAHTHAUERA-RXN OAHTHAUERA-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-5535 PWY-5535]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-5535 PWY-5535]
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* [http://metacyc.org/META/NEW-IMAGE?object=R265-RXN R265-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R282-RXN R282-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15008 RXN-15008]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15010 RXN-15010]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
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{{#set: common name=crotonate fermentation (to acetate and cyclohexane carboxylate)}}
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* LIGAND-RXN:
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{{#set: reaction found=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
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{{#set: total reaction=16}}
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* UNIPROT:
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{{#set: completion rate=25.0}}
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** [http://www.uniprot.org/uniprot/P42393 P42393]
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** [http://www.uniprot.org/uniprot/P20577 P20577]
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** [http://www.uniprot.org/uniprot/P18304 P18304]
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** [http://www.uniprot.org/uniprot/Q06121 Q06121]
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** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
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** [http://www.uniprot.org/uniprot/P20578 P20578]
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** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
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** [http://www.uniprot.org/uniprot/Q58328 Q58328]
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** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
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** [http://www.uniprot.org/uniprot/P03964 P03964]
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** [http://www.uniprot.org/uniprot/P00910 P00910]
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** [http://www.uniprot.org/uniprot/P00909 P00909]
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** [http://www.uniprot.org/uniprot/P00911 P00911]
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** [http://www.uniprot.org/uniprot/P17217 P17217]
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** [http://www.uniprot.org/uniprot/P20409 P20409]
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** [http://www.uniprot.org/uniprot/P00937 P00937]
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** [http://www.uniprot.org/uniprot/P00908 P00908]
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** [http://www.uniprot.org/uniprot/P05328 P05328]
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** [http://www.uniprot.org/uniprot/P06531 P06531]
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** [http://www.uniprot.org/uniprot/P18483 P18483]
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** [http://www.uniprot.org/uniprot/P25170 P25170]
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** [http://www.uniprot.org/uniprot/P26938 P26938]
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** [http://www.uniprot.org/uniprot/P24773 P24773]
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** [http://www.uniprot.org/uniprot/Q01999 Q01999]
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** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
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** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
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** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
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** [http://www.uniprot.org/uniprot/Q92370 Q92370]
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** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
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** [http://www.uniprot.org/uniprot/P94327 P94327]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Aldolase-type TIM barrel}}
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{{#set: common name=Indole-3-glycerol phosphate synthase}}
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{{#set: common name=FIST domain, N-terminal}}
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{{#set: common name=indole-3-glycerol-phosphate synthase}}
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{{#set: ec number=EC-4.1.1.48}}
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{{#set: gene associated=Ec-08_003030|Ec-03_003850|Ec-11_002820|Ec-08_003020|Ec-27_004020}}
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{{#set: in pathway=TRPSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:32, 21 March 2018

Pathway PWY-7401

  • taxonomic range:
  • common name:
    • crotonate fermentation (to acetate and cyclohexane carboxylate)
  • Synonym(s):

Reaction(s) found

4 reactions found over 16 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-7401&oldid=27629"