Difference between revisions of "FPPSYN-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5079 PWY-5079] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Prenyltransferase/squalen...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5079 PWY-5079] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L-phenylalanine degradation III
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** Prenyltransferase/squalene oxidase
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** Farnesyl pyrophosphate synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.10 EC-2.5.1.10]
 
* Synonym(s):
 
* Synonym(s):
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** Ehrlich pathway
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''4''' reactions in the full pathway
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* With identifiers:
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* [[PHEAMINOTRANS-RXN]]
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[FARNESYL-PP]][c]
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** 6 associated gene(s):
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* With common name(s):
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*** [[Ec-03_003270]]
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** 1 isopentenyl diphosphate[c] '''+''' 1 geranyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 (2E,6E)-farnesyl diphosphate[c]
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*** [[Ec-00_001230]]
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*** [[Ec-23_003500]]
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== Genes associated with this reaction  ==
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*** [[Ec-12_000850]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Ec-01_007480]]
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* Gene: [[Ec-10_003020]]
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*** [[Ec-09_004540]]
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** Source: [[annotation-esiliculosus_genome]]
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** 1 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[orthology-aragem]]
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* Gene: [[Ec-07_006170]]
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== Reaction(s) not found ==
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.58-RXN 2.6.1.58-RXN]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=PHENYLPYRUVATE-DECARBOXYLASE-RXN PHENYLPYRUVATE-DECARBOXYLASE-RXN]
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* Gene: [[Ec-16_004330]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7700 RXN-7700]
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-4751}}
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* RHEA:
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{{#set: common name=L-phenylalanine degradation III}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
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{{#set: common name=Ehrlich pathway}}
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* LIGAND-RXN:
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{{#set: reaction found=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
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{{#set: total reaction=4}}
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* UNIPROT:
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{{#set: completion rate=25.0}}
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** [http://www.uniprot.org/uniprot/P08524 P08524]
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** [http://www.uniprot.org/uniprot/P05369 P05369]
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** [http://www.uniprot.org/uniprot/P14324 P14324]
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** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
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** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
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** [http://www.uniprot.org/uniprot/P45204 P45204]
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** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
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** [http://www.uniprot.org/uniprot/P49350 P49350]
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** [http://www.uniprot.org/uniprot/P22939 P22939]
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** [http://www.uniprot.org/uniprot/Q08291 Q08291]
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** [http://www.uniprot.org/uniprot/P49349 P49349]
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** [http://www.uniprot.org/uniprot/Q09152 Q09152]
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** [http://www.uniprot.org/uniprot/P49351 P49351]
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** [http://www.uniprot.org/uniprot/P49352 P49352]
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** [http://www.uniprot.org/uniprot/Q43315 Q43315]
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** [http://www.uniprot.org/uniprot/O24241 O24241]
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** [http://www.uniprot.org/uniprot/O24242 O24242]
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** [http://www.uniprot.org/uniprot/Q92334 Q92334]
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** [http://www.uniprot.org/uniprot/Q92218 Q92218]
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** [http://www.uniprot.org/uniprot/Q92235 Q92235]
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** [http://www.uniprot.org/uniprot/Q92250 Q92250]
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** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
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** [http://www.uniprot.org/uniprot/P49353 P49353]
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** [http://www.uniprot.org/uniprot/O04882 O04882]
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** [http://www.uniprot.org/uniprot/O65004 O65004]
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** [http://www.uniprot.org/uniprot/O14230 O14230]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Prenyltransferase/squalene oxidase}}
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{{#set: common name=Farnesyl pyrophosphate synthase}}
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{{#set: ec number=EC-2.5.1.10}}
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{{#set: gene associated=Ec-10_003020|Ec-07_006170|Ec-16_004330}}
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{{#set: in pathway=PWY-7721|PWY-7736|PWY-5123|PWY-6859|PWY-7102}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:32, 21 March 2018

Reaction FPPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Prenyltransferase/squalene oxidase
    • Farnesyl pyrophosphate synthase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] + 1 geranyl diphosphate[c] => 1 diphosphate[c] + 1 (2E,6E)-farnesyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=FPPSYN-RXN&oldid=27641"