Difference between revisions of "RXN-12263"

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(Created page with "Category:Gene == Gene Ec-15_000160 == * left end position: ** 248805 * transcription direction: ** POSITIVE * right end position: ** 255788 * centisome position: ** 4.6089...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] == * direction: ** LEFT-TO-RIGHT * common name: ** Isopentenyl-diphosphate del...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-15_000160 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] ==
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* left end position:
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* direction:
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** 248805
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
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* right end position:
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* ec number:
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** 255788
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** [http://enzyme.expasy.org/EC/2.5.1.103 EC-2.5.1.103]
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* centisome position:
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** 4.608991   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0012_0169
 
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** Esi0012_0169
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[RXN-12086]]
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* With identifiers:
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** Source: [[annotation-esiliculosus_genome]]
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** 2 [[FARNESYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-465]][c]
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*** Assignment: go-term
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* With common name(s):
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* Reaction: [[RXN-12579]]
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** 2 (2E,6E)-farnesyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 presqualene diphosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-11_001030]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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*** Assignment: EC-NUMBER
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* Reaction: [[TRIACYLGLYCEROL-LIPASE-RXN]]
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
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** '''1''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-6105]], botryococcenes and methylated squalene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6105 PWY-6105]
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** '''2''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6767 PWY-6767]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5875]], staphyloxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5875 PWY-5875]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[LIPAS-PWY]]
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* [[PWY-6857]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=248805}}
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* LIGAND-RXN:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702]
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{{#set: right end position=255788}}
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* UNIPROT:
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{{#set: centisome position=4.608991    }}
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** [http://www.uniprot.org/uniprot/O69445 O69445]
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{{#set: common name=Esi_0012_0169|Esi0012_0169}}
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** [http://www.uniprot.org/uniprot/P36596 P36596]
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{{#set: reaction associated=RXN-12086|RXN-12579|TRIACYLGLYCEROL-LIPASE-RXN}}
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** [http://www.uniprot.org/uniprot/O65688 O65688]
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{{#set: pathway associated=LIPAS-PWY|PWY-6857}}
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** [http://www.uniprot.org/uniprot/O23118 O23118]
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** [http://www.uniprot.org/uniprot/O22107 O22107]
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** [http://www.uniprot.org/uniprot/Q40472 Q40472]
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** [http://www.uniprot.org/uniprot/O22106 O22106]
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** [http://www.uniprot.org/uniprot/P53800 P53800]
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** [http://www.uniprot.org/uniprot/P53799 P53799]
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** [http://www.uniprot.org/uniprot/P53798 P53798]
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** [http://www.uniprot.org/uniprot/P29704 P29704]
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** [http://www.uniprot.org/uniprot/Q04903 Q04903]
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** [http://www.uniprot.org/uniprot/Q42761 Q42761]
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** [http://www.uniprot.org/uniprot/Q42760 Q42760]
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** [http://www.uniprot.org/uniprot/P37268 P37268]
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** [http://www.uniprot.org/uniprot/Q02769 Q02769]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs}}
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{{#set: ec number=EC-2.5.1.103}}
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{{#set: gene associated=Ec-11_001030}}
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{{#set: in pathway=PWY-7072|PWY-6105|PWY-6767|PWY-5875}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:38, 21 March 2018

Reaction RXN-12263

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 (2E,6E)-farnesyl diphosphate[c] => 1 diphosphate[c] + 1 presqualene diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7072, hopanoid biosynthesis (bacteria): PWY-7072
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-6105, botryococcenes and methylated squalene biosynthesis: PWY-6105
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-6767, 4,4'-diapolycopenedioate biosynthesis: PWY-6767
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-5875, staphyloxanthin biosynthesis: PWY-5875
    • 1 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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