Difference between revisions of "CPD0-2171"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-2171 CPD0-2171] == * smiles: ** CCCCCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O...")
 
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-2171 CPD0-2171] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CCCCCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O
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* inchi key:
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** InChIKey=OXBHKMHNDGRDCZ-STLSENOWSA-J
 
* common name:
 
* common name:
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** GDP-mannose 4,6-dehydratase
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** (S)-3-hydroxytetradecanoyl-CoA
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/4.2.1.47 EC-4.2.1.47]
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** 989.861   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-12507]]
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** 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[RXN-14273]]
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** 1 GDP-α-D-mannose[c] '''=>''' 1 GDP-4-dehydro-6-deoxy-α-D-mannose[c] '''+''' 1 H2O[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-28_003400]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-11_005510]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* LIGAND-CPD:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23820 23820]
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** [http://www.genome.jp/dbget-bin/www_bget?C05260 C05260]
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* LIGAND-RXN:
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* CHEBI:
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** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=62614 62614]
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* UNIPROT:
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* BIGG : 45447
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** [http://www.uniprot.org/uniprot/Q84439 Q84439]
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* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46173488 46173488]
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{{#set: common name=GDP-mannose 4,6-dehydratase}}
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* HMDB : HMDB03934
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{{#set: ec number=EC-4.2.1.47}}
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{{#set: smiles=CCCCCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O}}
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{{#set: gene associated=Ec-28_003400|Ec-11_005510}}
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{{#set: inchi key=InChIKey=OXBHKMHNDGRDCZ-STLSENOWSA-J}}
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{{#set: in pathway=GDPRHAMSYN-PWY|PWY-7573|PWY-5740|PWY-66|PWY-5738|PWY-5739}}
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{{#set: common name=(S)-3-hydroxytetradecanoyl-CoA}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: molecular weight=989.861    }}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: consumed by=RXN-12507}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: produced by=RXN-14273}}

Latest revision as of 19:38, 21 March 2018

Metabolite CPD0-2171

  • smiles:
    • CCCCCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O
  • inchi key:
    • InChIKey=OXBHKMHNDGRDCZ-STLSENOWSA-J
  • common name:
    • (S)-3-hydroxytetradecanoyl-CoA
  • molecular weight:
    • 989.861
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CCCCCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O" cannot be used as a page name in this wiki.



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