Difference between revisions of "CARBPSYN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12897 CPD-12897] == * smiles: ** CC(C)=CCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl-phosphate s...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12897 CPD-12897] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] ==
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* smiles:
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* direction:
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** CC(C)=CCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=LPMIXVANMSEERY-FUEUKBNZSA-J
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* common name:
 
* common name:
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** 7-methyl-3-oxooct-6-enoyl-CoA
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** carbamoyl-phosphate synthase (glutamine-hydrolyzing)
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* molecular weight:
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* ec number:
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** 915.695   
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** [http://enzyme.expasy.org/EC/6.3.5.5 EC-6.3.5.5]
 
* Synonym(s):
 
* Synonym(s):
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** 7-methyl-3-oxo-6-octenoyl-CoA
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-11917]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[HCO3]][c] '''+''' 1 [[GLN]][c] '''+''' 2 [[ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[PROTON]][c] '''+''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[GLT]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
 +
** 1 hydrogen carbonate[c] '''+''' 1 L-glutamine[c] '''+''' 2 ATP[c] '''+''' 1 H2O[c] '''=>''' 2 H+[c] '''+''' 2 ADP[c] '''+''' 1 carbamoyl phosphate[c] '''+''' 1 phosphate[c] '''+''' 1 L-glutamate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-10_006110]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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== Pathways  ==
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* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
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** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5686]], UMP biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=50986200 50986200]
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** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
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* CHEBI:
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* UNIPROT:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=71410 71410]
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** [http://www.uniprot.org/uniprot/P08955 P08955]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P13258 P13258]
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** [http://www.genome.jp/dbget-bin/www_bget?C16466 C16466]
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** [http://www.uniprot.org/uniprot/P38099 P38099]
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* HMDB : HMDB60421
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** [http://www.uniprot.org/uniprot/P27708 P27708]
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{{#set: smiles=CC(C)=CCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
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** [http://www.uniprot.org/uniprot/Q91437 Q91437]
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{{#set: inchi key=InChIKey=LPMIXVANMSEERY-FUEUKBNZSA-J}}
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** [http://www.uniprot.org/uniprot/O28994 O28994]
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{{#set: common name=7-methyl-3-oxooct-6-enoyl-CoA}}
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** [http://www.uniprot.org/uniprot/P57689 P57689]
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{{#set: molecular weight=915.695    }}
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** [http://www.uniprot.org/uniprot/P38098 P38098]
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{{#set: common name=7-methyl-3-oxo-6-octenoyl-CoA}}
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** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27]
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{{#set: consumed by=RXN-11917}}
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** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8]
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** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8]
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** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6]
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** [http://www.uniprot.org/uniprot/P25993 P25993]
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** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7]
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** [http://www.uniprot.org/uniprot/P25994 P25994]
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** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02]
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** [http://www.uniprot.org/uniprot/O25577 O25577]
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** [http://www.uniprot.org/uniprot/P52557 P52557]
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** [http://www.uniprot.org/uniprot/P46537 P46537]
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** [http://www.uniprot.org/uniprot/P18185 P18185]
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** [http://www.uniprot.org/uniprot/P07259 P07259]
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** [http://www.uniprot.org/uniprot/P20054 P20054]
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** [http://www.uniprot.org/uniprot/P05990 P05990]
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** [http://www.uniprot.org/uniprot/P14845 P14845]
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** [http://www.uniprot.org/uniprot/Q06950 Q06950]
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** [http://www.uniprot.org/uniprot/Q92115 Q92115]
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** [http://www.uniprot.org/uniprot/Q09794 Q09794]
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** [http://www.uniprot.org/uniprot/P03965 P03965]
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** [http://www.uniprot.org/uniprot/P07258 P07258]
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** [http://www.uniprot.org/uniprot/P00968 P00968]
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** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1]
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** [http://www.uniprot.org/uniprot/P93345 P93345]
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** [http://www.uniprot.org/uniprot/Q27732 Q27732]
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** [http://www.uniprot.org/uniprot/Q27448 Q27448]
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** [http://www.uniprot.org/uniprot/O50236 O50236]
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** [http://www.uniprot.org/uniprot/O94313 O94313]
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** [http://www.uniprot.org/uniprot/Q59968 Q59968]
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** [http://www.uniprot.org/uniprot/Q59969 Q59969]
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** [http://www.uniprot.org/uniprot/O50301 O50301]
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** [http://www.uniprot.org/uniprot/O50302 O50302]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=carbamoyl-phosphate synthase (glutamine-hydrolyzing)}}
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{{#set: ec number=EC-6.3.5.5}}
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{{#set: gene associated=Ec-10_006110}}
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{{#set: in pathway=PWY-5154|PWY-7400|PWY-5686|ARGSYNBSUB-PWY|ARGSYN-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:40, 21 March 2018

Reaction CARBPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carbamoyl-phosphate synthase (glutamine-hydrolyzing)
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 hydrogen carbonate[c] + 1 L-glutamine[c] + 2 ATP[c] + 1 H2O[c] => 2 H+[c] + 2 ADP[c] + 1 carbamoyl phosphate[c] + 1 phosphate[c] + 1 L-glutamate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5154, L-arginine biosynthesis III (via N-acetyl-L-citrulline): PWY-5154
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5686, UMP biosynthesis: PWY-5686
    • 6 reactions found over 6 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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