Difference between revisions of "RXN0-5393"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4OHBENZOATE-OCTAPRENYLTRANSFER-RXN 4OHBENZOATE-OCTAPRENYLTRANSFER-RXN] == * direction: ** LEFT-TO-R...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5393 RXN0-5393] == * direction: ** LEFT-TO-RIGHT * common name: ** Beta-hydroxydecanoyl thiol...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4OHBENZOATE-OCTAPRENYLTRANSFER-RXN 4OHBENZOATE-OCTAPRENYLTRANSFER-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5393 RXN0-5393] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** UbiA prenyltransferase family
+
** Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
−
** 4-hydroxybenzoate nonaprenyltransferase
+
** ClpP/crotonase-like domain
 +
** enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.39 EC-2.5.1.39]
+
** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OCTAPRENYL-DIPHOSPHATE]][c] '''+''' 1 [[4-hydroxybenzoate]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[3-OCTAPRENYL-4-HYDROXYBENZOATE]][c]
+
** 1 [[CPD0-1162]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD0-1163]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 all-trans-octaprenyl diphosphate[c] '''+''' 1 4-hydroxybenzoate[c] '''=>''' 1 diphosphate[c] '''+''' 1 3-octaprenyl-4-hydroxybenzoate[c]
+
** 1 (2E,5Z)-tetradecenoyl-CoA[c] '''+''' 1 H2O[c] '''=>''' 1 (S)-3-hydroxy-(5Z)-tetradecenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-24_003910]]
+
* Gene: [[Ec-16_003560]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-00_007360]]
+
* Gene: [[Ec-16_001250]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-00_007350]]
+
* Gene: [[Ec-06_001380]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-25_002110]]
+
* Gene: [[Ec-14_006530]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6708]], ubiquinol-8 biosynthesis (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6708 PWY-6708]
+
* [[PWY0-1337]], oleate β-oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1337 PWY0-1337]
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5870]], ubiquinol-8 biosynthesis (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5870 PWY-5870]
+
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 40: Line 39:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27782 27782]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05615 R05615]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=UbiA prenyltransferase family}}
+
{{#set: common name=Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ}}
−
{{#set: common name=4-hydroxybenzoate nonaprenyltransferase}}
+
{{#set: common name=ClpP/crotonase-like domain}}
−
{{#set: ec number=EC-2.5.1.39}}
+
{{#set: common name=enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase}}
−
{{#set: gene associated=Ec-24_003910|Ec-00_007360|Ec-00_007350|Ec-25_002110}}
+
{{#set: ec number=EC-4.2.1.17}}
−
{{#set: in pathway=PWY-6708|PWY-5870}}
+
{{#set: gene associated=Ec-16_003560|Ec-16_001250|Ec-06_001380|Ec-14_006530}}
 +
{{#set: in pathway=PWY0-1337}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:52, 21 March 2018

Reaction RXN0-5393

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
    • ClpP/crotonase-like domain
    • enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (2E,5Z)-tetradecenoyl-CoA[c] + 1 H2O[c] => 1 (S)-3-hydroxy-(5Z)-tetradecenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1337, oleate β-oxidation: PWY0-1337
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN0-5393&oldid=29942"