Difference between revisions of "RXN1F-147"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** DNA-(apurinic or ap...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-147 RXN1F-147] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/5.5...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-147 RXN1F-147] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** DNA-(apurinic or apyrimidinic site) lyase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
+
** [http://enzyme.expasy.org/EC/5.5.1.18 EC-5.5.1.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[3-terminal-unsaturated-sugars]][c] '''+''' 1 [[5-Phosphopolynucleotides]][c]
+
** 1 [[CPD1F-114]][c] '''<=>''' 1 [[CPD1F-115]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a DNA containing an apurinic/apyrimidinic site[c] '''=>''' 1 a 3'-terminal unsaturated sugar[c] '''+''' 1 a 5'-phosphopolynucleotide[c]
+
** 1 all-trans-lycopene[c] '''<=>''' 1 &delta;-carotene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-01_006350]]
+
* Gene: [[Ec-00_005820]]
−
** Source: [[annotation-esiliculosus_genome]]
+
** Source: [[orthology-aragem]]
−
*** Assignment: GO-TERM
+
* Gene: [[Ec-02_005510]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-00_005850]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-07_007260]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-24_002150]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-24_002140]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-10_006240]]
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5946]], &delta;-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5946 PWY-5946]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[orthology]]
−
** Source: [[annotation-esiliculosus_genome]]
+
** Source: [[orthology-aragem]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P0AB83 P0AB83]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06963 R06963]
−
** [http://www.uniprot.org/uniprot/P28352 P28352]
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/Q58829 Q58829]
+
{{#set: ec number=EC-5.5.1.18}}
−
** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1]
+
{{#set: gene associated=Ec-00_005820|Ec-02_005510|Ec-00_005850|Ec-07_007260|Ec-24_002150|Ec-24_002140|Ec-10_006240}}
−
** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0]
+
{{#set: in pathway=PWY-5946}}
−
** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/P44319 P44319]
+
{{#set: reconstruction source=orthology-aragem}}
−
** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P04418 P04418]
+
−
** [http://www.uniprot.org/uniprot/P27695 P27695]
+
−
** [http://www.uniprot.org/uniprot/P23196 P23196]
+
−
** [http://www.uniprot.org/uniprot/P22936 P22936]
+
−
** [http://www.uniprot.org/uniprot/P43138 P43138]
+
−
** [http://www.uniprot.org/uniprot/P95945 P95945]
+
−
** [http://www.uniprot.org/uniprot/P50525 P50525]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=DNA-(apurinic or apyrimidinic site) lyase}}
+
−
{{#set: ec number=EC-4.2.99.18}}
+
−
{{#set: gene associated=Ec-01_006350}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 19:54, 21 March 2018

Reaction RXN1F-147

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-lycopene[c] <=> 1 δ-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5946, δ-carotene biosynthesis: PWY-5946
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN1F-147&oldid=30181"