Difference between revisions of "RXN-1321"

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(Created page with "Category:Gene == Gene Ec-27_002710 == * left end position: ** 2389214 * transcription direction: ** POSITIVE * right end position: ** 2391497 * centisome position: ** 37.0...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1321 RXN-1321] == * direction: ** LEFT-TO-RIGHT * common name: ** Lipoxygenase * ec number: **...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-27_002710 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1321 RXN-1321] ==
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* left end position:
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* direction:
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** 2389214
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Lipoxygenase
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* right end position:
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* ec number:
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** 2391497
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** [http://enzyme.expasy.org/EC/1.13.11.12 EC-1.13.11.12]
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* centisome position:
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** 37.04261   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0000_0643
 
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** Esi0000_0643
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN-15041]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[LINOLENIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-725]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 α-linolenate[c] '''+''' 1 oxygen[c] '''=>''' 1 13(S)-HPOTE[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-03_000010]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-03_000020]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-20_003620]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-20_003630]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY-5410]], traumatin and (Z)-3-hexen-1-yl acetate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5410 PWY-5410]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
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** '''10''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2389214}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34495 34495]
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{{#set: right end position=2391497}}
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* LIGAND-RXN:
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{{#set: centisome position=37.04261    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R07869 R07869]
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{{#set: common name=Esi_0000_0643|Esi0000_0643}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN-15041}}
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{{#set: common name=Lipoxygenase}}
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{{#set: ec number=EC-1.13.11.12}}
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{{#set: gene associated=Ec-03_000010|Ec-03_000020|Ec-20_003620|Ec-20_003630}}
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{{#set: in pathway=PWY-5410|PWY-735}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:18, 21 March 2018

Reaction RXN-1321

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Lipoxygenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5410, traumatin and (Z)-3-hexen-1-yl acetate biosynthesis: PWY-5410
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-735, jasmonic acid biosynthesis: PWY-735
    • 10 reactions found over 19 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-1321&oldid=26017"