Difference between revisions of "RXN-7800"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] == * direction: ** REVERSIBLE * common name: ** Ribose 5-phosphate iso...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7800 RXN-7800] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With id...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7800 RXN-7800] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
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** LEFT-TO-RIGHT
−
* common name:
+
−
** Ribose 5-phosphate isomerase, type A
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/5.3.1.6 EC-5.3.1.6]
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[CPD-7100]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[2K-4CH3-PENTANOATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-ribose 5-phosphate[c] '''<=>''' 1 D-ribulose 5-phosphate[c]
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** 1 H+[c] '''+''' 1 (2S)-2-isopropyl-3-oxosuccinate[c] '''=>''' 1 CO2[c] '''+''' 1 4-methyl-2-oxopentanoate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-08_003540]]
 
−
** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[aragem]]
 
−
** [[pantograph]]-[[aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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** '''12''' reactions found over '''15''' reactions in the full pathway
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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** '''13''' reactions found over '''13''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* Category: [[annotation]]
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** [[pantograph]]:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[aragem]]
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*** Tool: [[pathwaytools]]
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* [[annotation]]:
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−
** [[pathwaytools]]:
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−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14657 14657]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25078 25078]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
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** [http://www.genome.jp/dbget-bin/www_bget?R01652 R01652]
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* UNIPROT:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
+
−
** [http://www.uniprot.org/uniprot/P44725 P44725]
+
−
** [http://www.uniprot.org/uniprot/Q58998 Q58998]
+
−
** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
+
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** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
+
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** [http://www.uniprot.org/uniprot/P37351 P37351]
+
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** [http://www.uniprot.org/uniprot/P74234 P74234]
+
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** [http://www.uniprot.org/uniprot/Q55766 Q55766]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Ribose 5-phosphate isomerase, type A}}
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−
{{#set: ec number=EC-5.3.1.6}}
+
−
{{#set: gene associated=Ec-08_003540}}
+
−
{{#set: in pathway=P124-PWY|CALVIN-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:19, 21 March 2018

Reaction RXN-7800

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • LEUSYN-PWY, L-leucine biosynthesis: LEUSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6871, 3-methylbutanol biosynthesis (engineered): PWY-6871
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links



Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-7800&oldid=26053"