Difference between revisions of "DTDPKIN-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPKIN-RXN DTDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPKIN-RXN DTDPKIN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** palmitate biosynthesis II (bacteria and plants)
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** nucleoside diphosphate kinase
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** Nucleoside diphosphate kinase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
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** palmitic acid biosynthesis
 
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** de novo lipogenesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''28''' reaction(s) found
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* With identifiers:
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** [[4.2.1.61-RXN]]
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** 1 [[TDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c]
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** [[4.2.1.58-RXN]]
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* With common name(s):
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** [[RXN-9659]]
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** 1 dTDP[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 dTTP[c]
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** [[RXN-9658]]
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** [[RXN-9657]]
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== Genes associated with this reaction  ==
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** [[RXN-9655]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[RXN-9523]]
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* Gene: [[Ec-26_003930]]
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** [[RXN-9524]]
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** Source: [[annotation-esiliculosus_genome]]
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** [[RXN-9527]]
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*** Assignment: GO-TERM
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** [[RXN-9540]]
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* Gene: [[Ec-07_000140]]
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** [[RXN-9528]]
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** Source: [[annotation-esiliculosus_genome]]
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** [[RXN-9549]]
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*** Assignment: GO-TERM
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** [[RXN-16393]]
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* Gene: [[Ec-03_001380]]
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** [[RXN-9662]]
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** Source: [[annotation-esiliculosus_genome]]
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** [[RXN-9663]]
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*** Assignment: GO-TERM
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** [[RXN-9660]]
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* Gene: [[Ec-22_003280]]
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** [[RXN-9661]]
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** Source: [[annotation-esiliculosus_genome]]
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** [[RXN-9514]]
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*** Assignment: GO-TERM
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** [[RXN-9518]]
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* Gene: [[Ec-04_001140]]
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** [[RXN-9623]]
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** Source: [[annotation-esiliculosus_genome]]
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** [[RXN-9539]]
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*** Assignment: GO-TERM
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** [[RXN-9536]]
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** Source: [[orthology-aragem]]
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** [[RXN-9537]]
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* Gene: [[Ec-11_004330]]
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** [[RXN-9535]]
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** Source: [[annotation-esiliculosus_genome]]
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** [[RXN-9532]]
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*** Assignment: EC-NUMBER
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** [[RXN-9533]]
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** Source: [[orthology-aragem]]
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** [[RXN-9516]]
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* Gene: [[Ec-11_005170]]
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** [[RXN-9531]]
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** Source: [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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*** Assignment: GO-TERM
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* '''3''' reaction(s) not found
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== Pathways  ==
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-9520 RXN-9520]
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
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** [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.21-RXN 3.1.2.21-RXN]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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** [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.59-RXN 4.2.1.59-RXN]
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''14''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27682 27682]
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{{#set: taxonomic range=TAX-33090}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
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{{#set: common name=palmitate biosynthesis II (bacteria and plants)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=palmitic acid biosynthesis|de novo lipogenesis}}
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{{#set: common name=nucleoside diphosphate kinase}}
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{{#set: reaction found=28}}
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{{#set: common name=Nucleoside diphosphate kinase}}
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{{#set: reaction not found=3}}
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{{#set: ec number=EC-2.7.4.6}}
 +
{{#set: gene associated=Ec-26_003930|Ec-07_000140|Ec-03_001380|Ec-22_003280|Ec-04_001140|Ec-11_004330|Ec-11_005170}}
 +
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
 +
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:22, 21 March 2018

Reaction DTDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nucleoside diphosphate kinase
    • Nucleoside diphosphate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dTDP[c] + 1 ATP[c] => 1 ADP[c] + 1 dTTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 14 reactions found over 17 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=DTDPKIN-RXN&oldid=26450"