Difference between revisions of "GPH-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9528 RXN-9528] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-decanoyl-[acyl-carrier...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-phosphoglycolate phosphatase,...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9528 RXN-9528] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-oxo-decanoyl-[acyl-carrier protein] reductase
+
** 2-phosphoglycolate phosphatase, eukaryotic
−
** NAD(P)-binding domain
+
** phosphoglycolate phosphatase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/3.1.3.18 EC-3.1.3.18]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADPH]][c] '''+''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Beta-hydroxydecanoyl-ACPs]][c]
+
** 1 [[CPD-67]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[GLYCOLLATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADPH[c] '''+''' 1 a 3-oxo-decanoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxydecanoyl-[acp][c]
+
** 1 2-phosphoglycolate[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 glycolate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-01_007100]]
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* Gene: [[Ec-28_001790]]
−
** ESILICULOSUS_GENOME
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** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
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*** Assignment: GO-TERM
 +
* Gene: [[Ec-12_008080]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
−
** '''28''' reactions found over '''31''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
−
** '''20''' reactions found over '''31''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14369 14369]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P40852 P40852]
 +
** [http://www.uniprot.org/uniprot/P40853 P40853]
 +
** [http://www.uniprot.org/uniprot/P32662 P32662]
 +
** [http://www.uniprot.org/uniprot/P73525 P73525]
 +
** [http://www.uniprot.org/uniprot/O33512 O33512]
 +
** [http://www.uniprot.org/uniprot/Q9S586 Q9S586]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-oxo-decanoyl-[acyl-carrier protein] reductase}}
+
{{#set: common name=2-phosphoglycolate phosphatase, eukaryotic}}
−
{{#set: common name=NAD(P)-binding domain}}
+
{{#set: common name=phosphoglycolate phosphatase}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: ec number=EC-3.1.3.18}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: gene associated=Ec-28_001790|Ec-12_008080}}
−
{{#set: ec number=EC-1.1.1.100}}
+
{{#set: in pathway=PWY-181}}
−
{{#set: gene associated=Ec-01_007100}}
+
−
{{#set: in pathway=PWY-5971|PWY-5994}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:23, 21 March 2018

Reaction GPH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-phosphoglycolate phosphatase, eukaryotic
    • phosphoglycolate phosphatase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-phosphoglycolate[c] + 1 H2O[c] => 1 phosphate[c] + 1 glycolate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-181, photorespiration: PWY-181
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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