Difference between revisions of "RXN0-2161"
From metabolic_network
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Cis-Delta5-dodecenoyl-ACPs Cis-Delta5-dodecenoyl-ACPs] == * common name: ** a (5Z)-dodec-5-enoy...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** Seryl-tRNA synthetase ** se...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == |
| + | * direction: | ||
| + | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
| − | ** | + | ** Seryl-tRNA synthetase |
| + | ** serine-tRNA ligase | ||
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11] | ||
* Synonym(s): | * Synonym(s): | ||
| − | |||
| − | == Reaction(s) | + | == Reaction Formula == |
| − | * [[ | + | * With identifiers: |
| − | == | + | ** 1 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] |
| − | * [[ | + | * With common name(s): |
| − | == | + | ** 1 H+[c] '''+''' 1 ATP[c] '''+''' 1 L-serine[c] '''+''' 1 a tRNAsec[c] '''=>''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c] |
| + | |||
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Ec-24_004300]] | ||
| + | ** Source: [[annotation-esiliculosus_genome]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | * Gene: [[Ec-08_002360]] | ||
| + | ** Source: [[annotation-esiliculosus_genome]] | ||
| + | *** Assignment: GO-TERM | ||
| + | == Pathways == | ||
| + | * [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901] | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281] | ||
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-esiliculosus_genome]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: common name= | + | * LIGAND-RXN: |
| − | {{#set: common name= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218] |
| − | {{#set: | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: | + | {{#set: common name=Seryl-tRNA synthetase}} |
| + | {{#set: common name=serine-tRNA ligase}} | ||
| + | {{#set: ec number=EC-6.1.1.11}} | ||
| + | {{#set: gene associated=Ec-24_004300|Ec-08_002360}} | ||
| + | {{#set: in pathway=PWY0-901|PWY-6281}} | ||
| + | {{#set: reconstruction category=annotation}} | ||
| + | {{#set: reconstruction source=annotation-esiliculosus_genome}} | ||
| + | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 19:23, 21 March 2018
Contents
Reaction RXN0-2161
- direction:
- LEFT-TO-RIGHT
- common name:
- Seryl-tRNA synthetase
- serine-tRNA ligase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 H+[c] + 1 ATP[c] + 1 L-serine[c] + 1 a tRNAsec[c] => 1 an L-seryl-[tRNAsec][c] + 1 diphosphate[c] + 1 AMP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Ec-24_004300
- Source: annotation-esiliculosus_genome
- Assignment: EC-NUMBER
- Source: annotation-esiliculosus_genome
- Gene: Ec-08_002360
- Source: annotation-esiliculosus_genome
- Assignment: GO-TERM
- Source: annotation-esiliculosus_genome
Pathways
- PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
- 2 reactions found over 3 reactions in the full pathway
- PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-esiliculosus_genome
- Tool: pathwaytools
- Source: annotation-esiliculosus_genome
External links
- LIGAND-RXN:
