Difference between revisions of "RXN-12978"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CIT CIT] == * smiles: ** C(=O)([O-])CC(C(=O)[O-])(O)CC(=O)[O-] * inchi key: ** InChIKey=KRKNYBC...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12978 RXN-12978] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-CoA synthet...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CIT CIT] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12978 RXN-12978] ==
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* smiles:
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* direction:
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** C(=O)([O-])CC(C(=O)[O-])(O)CC(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=KRKNYBCHXYNGOX-UHFFFAOYSA-K
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* common name:
 
* common name:
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** citrate
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** long chain acyl-CoA synthetase
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* molecular weight:
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** long chain acyl-coA synthetase
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** 189.101   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** citr
 
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** cit
 
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** citric acid
 
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** 2-hydroxy-1,2,3-propanetricarboxylic acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[ATP-CITRATE-PRO-S--LYASE-RXN]]
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* With identifiers:
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* [[biomass_rxn]]
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** 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-14018]][c] '''+''' 1 [[PPI]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[CITSYN-RXN]]
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** 1 icosapentaenoate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 icosapentaenoyl-CoA[c] '''+''' 1 diphosphate[c]
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== Reaction(s) of unknown directionality ==
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* [[RXN-14047]]
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== Genes associated with this reaction  ==
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* [[ACONITATEDEHYDR-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-01_001560]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-12_008720]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-02_006430]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-03_003710]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 77-92-9
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{{#set: direction=LEFT-TO-RIGHT}}
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* BIGG : 34080
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{{#set: common name=long chain acyl-CoA synthetase}}
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* PUBCHEM:
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{{#set: common name=long chain acyl-coA synthetase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=31348 31348]
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{{#set: ec number=EC-6.2.1.3}}
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* KNAPSACK : C00007619
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{{#set: gene associated=Ec-01_001560|Ec-12_008720|Ec-02_006430|Ec-03_003710}}
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* HMDB : HMDB00094
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{{#set: in pathway=}}
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* LIGAND-CPD:
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{{#set: reconstruction category=annotation}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00158 C00158]
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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* CHEMSPIDER:
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.chemspider.com/Chemical-Structure.29081.html 29081]
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* CHEBI:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16947 16947]
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* METABOLIGHTS : MTBLC16947
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{{#set: smiles=C(=O)([O-])CC(C(=O)[O-])(O)CC(=O)[O-]}}
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{{#set: inchi key=InChIKey=KRKNYBCHXYNGOX-UHFFFAOYSA-K}}
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{{#set: common name=citrate}}
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{{#set: molecular weight=189.101    }}
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{{#set: common name=citr|cit|citric acid|2-hydroxy-1,2,3-propanetricarboxylic acid}}
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{{#set: consumed by=ATP-CITRATE-PRO-S--LYASE-RXN|biomass_rxn}}
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{{#set: produced by=CITSYN-RXN}}
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{{#set: consumed or produced by=RXN-14047|ACONITATEDEHYDR-RXN}}
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Latest revision as of 19:30, 21 March 2018

Reaction RXN-12978

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long chain acyl-CoA synthetase
    • long chain acyl-coA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-12978&oldid=27391"