Difference between revisions of "PANTEPADENYLYLTRAN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** biotin synthase * ec nu...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTEPADENYLYLTRAN-RXN PANTEPADENYLYLTRAN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [ht...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTEPADENYLYLTRAN-RXN PANTEPADENYLYLTRAN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** biotin synthase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.8.1.6 EC-2.8.1.6]
+
** [http://enzyme.expasy.org/EC/2.7.7.3 EC-2.7.7.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 2 [[MET]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[BIOTIN]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PANTETHEINE-P]][c] '''=>''' 1 [[DEPHOSPHO-COA]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a sulfurated [sulfur carrier][c] '''+''' 1 dethiobiotin[c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''+''' 2 S-adenosyl-L-methionine[c] '''=>''' 2 L-methionine[c] '''+''' 1 an unsulfurated [sulfur carrier][c] '''+''' 2 5'-deoxyadenosine[c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 1 biotin[c]
+
** 1 ATP[c] '''+''' 1 H+[c] '''+''' 1 4'-phosphopantetheine[c] '''=>''' 1 3'-dephospho-CoA[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-24_000980]]
 
−
** ESILICULOSUS_GENOME
 
−
***GO-TERM
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
+
* [[COA-PWY-1]], coenzyme A biosynthesis II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=COA-PWY-1 COA-PWY-1]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380]
+
* [[COA-PWY]], coenzyme A biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=COA-PWY COA-PWY]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[gap-filling]]
−
** [[pathwaytools]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22060 22060]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19801 19801]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03035 R03035]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7]
+
−
** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3]
+
−
** [http://www.uniprot.org/uniprot/P53557 P53557]
+
−
** [http://www.uniprot.org/uniprot/O67104 O67104]
+
−
** [http://www.uniprot.org/uniprot/P44987 P44987]
+
−
** [http://www.uniprot.org/uniprot/Q58692 Q58692]
+
−
** [http://www.uniprot.org/uniprot/P0A506 P0A506]
+
−
** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5]
+
−
** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3]
+
−
** [http://www.uniprot.org/uniprot/P46396 P46396]
+
−
** [http://www.uniprot.org/uniprot/Q47862 Q47862]
+
−
** [http://www.uniprot.org/uniprot/P19206 P19206]
+
−
** [http://www.uniprot.org/uniprot/P32451 P32451]
+
−
** [http://www.uniprot.org/uniprot/P54967 P54967]
+
−
** [http://www.uniprot.org/uniprot/P46715 P46715]
+
−
** [http://www.uniprot.org/uniprot/P73538 P73538]
+
−
** [http://www.uniprot.org/uniprot/P12996 P12996]
+
−
** [http://www.uniprot.org/uniprot/O59778 O59778]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=biotin synthase}}
+
{{#set: ec number=EC-2.7.7.3}}
−
{{#set: ec number=EC-2.8.1.6}}
+
{{#set: in pathway=COA-PWY-1|COA-PWY}}
−
{{#set: gene associated=Ec-24_000980}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: in pathway=PWY0-1507|PWY-7380}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Latest revision as of 19:33, 21 March 2018

Reaction PANTEPADENYLYLTRAN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 H+[c] + 1 4'-phosphopantetheine[c] => 1 3'-dephospho-CoA[c] + 1 diphosphate[c]

Genes associated with this reaction

Pathways

  • COA-PWY-1, coenzyme A biosynthesis II (mammalian): COA-PWY-1
    • 4 reactions found over 5 reactions in the full pathway
  • COA-PWY, coenzyme A biosynthesis I: COA-PWY
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links




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