Difference between revisions of "RXN-9839"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-201 PWY66-201] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9839 RXN-9839] == * direction: ** LEFT-TO-RIGHT * common name: ** Mannuronan C-5-epimerase ** M...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-201 PWY66-201] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9839 RXN-9839] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** nicotine degradation IV
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** Mannuronan C-5-epimerase
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** Mannuronan C-5-epimerase 4
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* ec number:
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** [http://enzyme.expasy.org/EC/5.1.3.37 EC-5.1.3.37]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''2''' reaction(s) found
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* With identifiers:
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** [[RXN66-81]]
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** 1 [[Poly-beta-D-Mannuronate]][c] '''=>''' 1 [[ALGINATE]][c]
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** [[RXN66-146]]
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* With common name(s):
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== Reaction(s) not found ==
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** 1 mannuronan[c] '''=>''' 1 alginate[c]
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* '''15''' reaction(s) not found
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-105 RXN66-105]
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== Genes associated with this reaction ==
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-104 RXN66-104]
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Genes have been associated with this reaction based on different elements listed below.
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-103 RXN66-103]
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* Gene: [[Ec-08_004820]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-101 RXN66-101]
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** Source: [[annotation-esiliculosus_genome]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-142 RXN66-142]
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*** Assignment: AUTOMATED-NAME-MATCH
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-141 RXN66-141]
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* Gene: [[Ec-25_001850]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-62 RXN66-62]
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** Source: [[annotation-esiliculosus_genome]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-61 RXN66-61]
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*** Assignment: AUTOMATED-NAME-MATCH
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-147 RXN66-147]
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* Gene: [[Ec-24_002750]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-13088 RXN-13088]
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** Source: [[annotation-esiliculosus_genome]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-145 RXN66-145]
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*** Assignment: AUTOMATED-NAME-MATCH
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-144 RXN66-144]
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* Gene: [[Ec-20_004700]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-13089 RXN-13089]
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** Source: [[annotation-esiliculosus_genome]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-83 RXN66-83]
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*** Assignment: AUTOMATED-NAME-MATCH
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN66-82 RXN66-82]
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* Gene: [[Ec-11_000400]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-07_000890]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-12_000360]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-06_006700]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-19_003150]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-27_006700]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-09_003950]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-6082]], alginate biosynthesis II (bacterial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6082 PWY-6082]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6073]], alginate biosynthesis I (algal): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6073 PWY-6073]
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** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-40674}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=nicotine degradation IV}}
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{{#set: common name=Mannuronan C-5-epimerase}}
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{{#set: reaction found=2}}
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{{#set: common name=Mannuronan C-5-epimerase 4}}
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{{#set: reaction not found=15}}
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{{#set: ec number=EC-5.1.3.37}}
 +
{{#set: gene associated=Ec-08_004820|Ec-25_001850|Ec-24_002750|Ec-20_004700|Ec-11_000400|Ec-07_000890|Ec-12_000360|Ec-06_006700|Ec-19_003150|Ec-27_006700|Ec-09_003950}}
 +
{{#set: in pathway=PWY-6082|PWY-6073}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:34, 21 March 2018

Reaction RXN-9839

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Mannuronan C-5-epimerase
    • Mannuronan C-5-epimerase 4
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6082, alginate biosynthesis II (bacterial): PWY-6082
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6073, alginate biosynthesis I (algal): PWY-6073
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-9839&oldid=27895"