Difference between revisions of "RIBOFLAVINKIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GSHTRAN-RXN GSHTRAN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Thioredoxin-like fold *...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINKIN-RXN RIBOFLAVINKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** riboflavin...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GSHTRAN-RXN GSHTRAN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINKIN-RXN RIBOFLAVINKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Thioredoxin-like fold
+
** riboflavin kinase
−
** Glutathione S-transferase, N-terminal
+
−
** Glutathione S-transferase, C-terminal-like
+
−
** Membrane associated eicosanoid/glutathione metabolism-like domain
+
−
** Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein
+
−
** DSBA-like thioredoxin domain
+
−
** Glutathione S-transferase (GST)
+
−
** putative Glutathione S-transferase
+
−
** Glutathione S-transferase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.18 EC-2.5.1.18]
+
** [http://enzyme.expasy.org/EC/2.7.1.26 EC-2.7.1.26]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[RX]][c] '''+''' 1 [[GLUTATHIONE]][c] '''=>''' 1 [[HX]][c] '''+''' 1 [[S-Substituted-Glutathione]][c]
+
** 1 [[RIBOFLAVIN]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[FMN]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 RX[c] '''+''' 1 glutathione[c] '''=>''' 1 HX[c] '''+''' 1 a glutathione-toxin conjugate[c]
+
** 1 riboflavin[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 FMN[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-13_002370]]
+
* Gene: [[Ec-04_001490]]
−
** ESILICULOSUS_GENOME
+
** Source: [[orthology-aragem]]
−
***EC-NUMBER
+
* Gene: [[Ec-04_004280]]
−
* [[Ec-13_002360]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** Assignment: GO-TERM
−
***EC-NUMBER
+
* Gene: [[Ec-10_002950]]
−
* [[Ec-09_003670]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** Assignment: GO-TERM
−
***EC-NUMBER
+
* Gene: [[Ec-14_005260]]
−
* [[Ec-16_001680]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** [[pantograph]]-[[aragem]]
+
*** Assignment: GO-TERM
−
* [[Ec-00_008870]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-06_002520]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-27_000390]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-10_001330]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-20_001950]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-27_000400]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-00_008380]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-00_008370]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-06_008030]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-24_001030]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-18_001510]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-00_000320]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-13_000340]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-00_008360]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-00_008890]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-11_002590]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6842]], glutathione-mediated detoxification II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6842 PWY-6842]
+
* [[PWY66-366]], flavin biosynthesis IV (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366]
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-4061]], glutathione-mediated detoxification I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4061 PWY-4061]
+
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5523]], 5,6-dimethylbenzimidazole biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5523 PWY-5523]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-aragem]]
−
*** [[aragem]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14357 14357]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03522 R03522]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00549 R00549]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P30116 P30116]
+
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
−
** [http://www.uniprot.org/uniprot/P04903 P04903]
+
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
−
** [http://www.uniprot.org/uniprot/P04904 P04904]
+
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
−
** [http://www.uniprot.org/uniprot/P13745 P13745]
+
−
** [http://www.uniprot.org/uniprot/P08011 P08011]
+
−
** [http://www.uniprot.org/uniprot/Q7M0B7 Q7M0B7]
+
−
** [http://www.uniprot.org/uniprot/P08009 P08009]
+
−
** [http://www.uniprot.org/uniprot/P04905 P04905]
+
−
** [http://www.uniprot.org/uniprot/P21266 P21266]
+
−
** [http://www.uniprot.org/uniprot/P09211 P09211]
+
−
** [http://www.uniprot.org/uniprot/P28161 P28161]
+
−
** [http://www.uniprot.org/uniprot/Q08863 Q08863]
+
−
** [http://www.uniprot.org/uniprot/P30109 P30109]
+
−
** [http://www.uniprot.org/uniprot/P28338 P28338]
+
−
** [http://www.uniprot.org/uniprot/P46088 P46088]
+
−
** [http://www.uniprot.org/uniprot/P15964 P15964]
+
−
** [http://www.uniprot.org/uniprot/P46439 P46439]
+
−
** [http://www.uniprot.org/uniprot/Q9VG97 Q9VG97]
+
−
** [http://www.uniprot.org/uniprot/Q03013 Q03013]
+
−
** [http://www.uniprot.org/uniprot/P41043 P41043]
+
−
** [http://www.uniprot.org/uniprot/P28801 P28801]
+
−
** [http://www.uniprot.org/uniprot/P46418 P46418]
+
−
** [http://www.uniprot.org/uniprot/P46425 P46425]
+
−
** [http://www.uniprot.org/uniprot/P0A9D2 P0A9D2]
+
−
** [http://www.uniprot.org/uniprot/P08263 P08263]
+
−
** [http://www.uniprot.org/uniprot/P30712 P30712]
+
−
** [http://www.uniprot.org/uniprot/Q9NAW7 Q9NAW7]
+
−
** [http://www.uniprot.org/uniprot/P08515 P08515]
+
−
** [http://www.uniprot.org/uniprot/P10620 P10620]
+
−
** [http://www.uniprot.org/uniprot/P19639 P19639]
+
−
** [http://www.uniprot.org/uniprot/Q9WU21 Q9WU21]
+
−
** [http://www.uniprot.org/uniprot/P15626 P15626]
+
−
** [http://www.uniprot.org/uniprot/Q08862 Q08862]
+
−
** [http://www.uniprot.org/uniprot/P26624 P26624]
+
−
** [http://www.uniprot.org/uniprot/Q03377 Q03377]
+
−
** [http://www.uniprot.org/uniprot/P19157 P19157]
+
−
** [http://www.uniprot.org/uniprot/P20137 P20137]
+
−
** [http://www.uniprot.org/uniprot/Q9VG95 Q9VG95]
+
−
** [http://www.uniprot.org/uniprot/Q9VG98 Q9VG98]
+
−
** [http://www.uniprot.org/uniprot/Q9VG96 Q9VG96]
+
−
** [http://www.uniprot.org/uniprot/O31817 O31817]
+
−
** [http://www.uniprot.org/uniprot/Q8X6U4 Q8X6U4]
+
−
** [http://www.uniprot.org/uniprot/P30713 P30713]
+
−
** [http://www.uniprot.org/uniprot/Q42706 Q42706]
+
−
** [http://www.uniprot.org/uniprot/Q28514 Q28514]
+
−
** [http://www.uniprot.org/uniprot/Q9TXB7 Q9TXB7]
+
−
** [http://www.uniprot.org/uniprot/P09792 P09792]
+
−
** [http://www.uniprot.org/uniprot/P16413 P16413]
+
−
** [http://www.uniprot.org/uniprot/P81706 P81706]
+
−
** [http://www.uniprot.org/uniprot/P09488 P09488]
+
−
** [http://www.uniprot.org/uniprot/Q7M446 Q7M446]
+
−
** [http://www.uniprot.org/uniprot/P10299 P10299]
+
−
** [http://www.uniprot.org/uniprot/Q7M0B6 Q7M0B6]
+
−
** [http://www.uniprot.org/uniprot/Q7M0C0 Q7M0C0]
+
−
** [http://www.uniprot.org/uniprot/Q7M0F7 Q7M0F7]
+
−
** [http://www.uniprot.org/uniprot/P22416 P22416]
+
−
** [http://www.uniprot.org/uniprot/P30102 P30102]
+
−
** [http://www.uniprot.org/uniprot/P28342 P28342]
+
−
** [http://www.uniprot.org/uniprot/P24473 P24473]
+
−
** [http://www.uniprot.org/uniprot/Q7M0F4 Q7M0F4]
+
−
** [http://www.uniprot.org/uniprot/Q7M0F3 Q7M0F3]
+
−
** [http://www.uniprot.org/uniprot/P26697 P26697]
+
−
** [http://www.uniprot.org/uniprot/Q9PS57 Q9PS57]
+
−
** [http://www.uniprot.org/uniprot/Q9JLQ6 Q9JLQ6]
+
−
** [http://www.uniprot.org/uniprot/P30115 P30115]
+
−
** [http://www.uniprot.org/uniprot/P09210 P09210]
+
−
** [http://www.uniprot.org/uniprot/Q01579 Q01579]
+
−
** [http://www.uniprot.org/uniprot/P24472 P24472]
+
−
** [http://www.uniprot.org/uniprot/Q7M0F5 Q7M0F5]
+
−
** [http://www.uniprot.org/uniprot/Q7M0F6 Q7M0F6]
+
−
** [http://www.uniprot.org/uniprot/Q7M0F2 Q7M0F2]
+
−
** [http://www.uniprot.org/uniprot/Q9TQQ8 Q9TQQ8]
+
−
** [http://www.uniprot.org/uniprot/Q7M0B8 Q7M0B8]
+
−
** [http://www.uniprot.org/uniprot/Q7M059 Q7M059]
+
−
** [http://www.uniprot.org/uniprot/P30568 P30568]
+
−
** [http://www.uniprot.org/uniprot/Q03425 Q03425]
+
−
** [http://www.uniprot.org/uniprot/P10649 P10649]
+
−
** [http://www.uniprot.org/uniprot/P46422 P46422]
+
−
** [http://www.uniprot.org/uniprot/P45875 P45875]
+
−
** [http://www.uniprot.org/uniprot/P42769 P42769]
+
−
** [http://www.uniprot.org/uniprot/P46436 P46436]
+
−
** [http://www.uniprot.org/uniprot/Q7M0F1 Q7M0F1]
+
−
** [http://www.uniprot.org/uniprot/P42760 P42760]
+
−
** [http://www.uniprot.org/uniprot/P42761 P42761]
+
−
** [http://www.uniprot.org/uniprot/Q9GQE3 Q9GQE3]
+
−
** [http://www.uniprot.org/uniprot/P46427 P46427]
+
−
** [http://www.uniprot.org/uniprot/P48438 P48438]
+
−
** [http://www.uniprot.org/uniprot/Q08392 Q08392]
+
−
** [http://www.uniprot.org/uniprot/Q08393 Q08393]
+
−
** [http://www.uniprot.org/uniprot/P30711 P30711]
+
−
** [http://www.uniprot.org/uniprot/Q9UDH6 Q9UDH6]
+
−
** [http://www.uniprot.org/uniprot/Q9UDH3 Q9UDH3]
+
−
** [http://www.uniprot.org/uniprot/Q9UDH2 Q9UDH2]
+
−
** [http://www.uniprot.org/uniprot/Q9UDH1 Q9UDH1]
+
−
** [http://www.uniprot.org/uniprot/P46432 P46432]
+
−
** [http://www.uniprot.org/uniprot/P46433 P46433]
+
−
** [http://www.uniprot.org/uniprot/P46420 P46420]
+
−
** [http://www.uniprot.org/uniprot/P27013 P27013]
+
−
** [http://www.uniprot.org/uniprot/P27014 P27014]
+
−
** [http://www.uniprot.org/uniprot/P20135 P20135]
+
−
** [http://www.uniprot.org/uniprot/P46409 P46409]
+
−
** [http://www.uniprot.org/uniprot/P46421 P46421]
+
−
** [http://www.uniprot.org/uniprot/P46431 P46431]
+
−
** [http://www.uniprot.org/uniprot/Q7M0B9 Q7M0B9]
+
−
** [http://www.uniprot.org/uniprot/Q7M3E7 Q7M3E7]
+
−
** [http://www.uniprot.org/uniprot/Q7M3E8 Q7M3E8]
+
−
** [http://www.uniprot.org/uniprot/Q7M3E9 Q7M3E9]
+
−
** [http://www.uniprot.org/uniprot/Q64471 Q64471]
+
−
** [http://www.uniprot.org/uniprot/Q91VB0 Q91VB0]
+
−
** [http://www.uniprot.org/uniprot/P15214 P15214]
+
−
** [http://www.uniprot.org/uniprot/P47954 P47954]
+
−
** [http://www.uniprot.org/uniprot/Q60550 Q60550]
+
−
** [http://www.uniprot.org/uniprot/Q12760 Q12760]
+
−
** [http://www.uniprot.org/uniprot/O65032 O65032]
+
−
** [http://www.uniprot.org/uniprot/O65857 O65857]
+
−
** [http://www.uniprot.org/uniprot/O82451 O82451]
+
−
** [http://www.uniprot.org/uniprot/O24595 O24595]
+
−
** [http://www.uniprot.org/uniprot/O49235 O49235]
+
−
** [http://www.uniprot.org/uniprot/O04437 O04437]
+
−
** [http://www.uniprot.org/uniprot/P30110 P30110]
+
−
** [http://www.uniprot.org/uniprot/P30111 P30111]
+
−
** [http://www.uniprot.org/uniprot/O04874 O04874]
+
−
** [http://www.uniprot.org/uniprot/P32111 P32111]
+
−
** [http://www.uniprot.org/uniprot/O22330 O22330]
+
−
** [http://www.uniprot.org/uniprot/O49821 O49821]
+
−
** [http://www.uniprot.org/uniprot/O65344 O65344]
+
−
** [http://www.uniprot.org/uniprot/O81602 O81602]
+
−
** [http://www.uniprot.org/uniprot/O85984 O85984]
+
−
** [http://www.uniprot.org/uniprot/Q21355 Q21355]
+
−
** [http://www.uniprot.org/uniprot/O16115 O16115]
+
−
** [http://www.uniprot.org/uniprot/O16116 O16116]
+
−
** [http://www.uniprot.org/uniprot/Q9ZRT5 Q9ZRT5]
+
−
** [http://www.uniprot.org/uniprot/Q9ZRW8 Q9ZRW8]
+
−
** [http://www.uniprot.org/uniprot/Q9SM20 Q9SM20]
+
−
** [http://www.uniprot.org/uniprot/Q9ZP62 Q9ZP62]
+
−
** [http://www.uniprot.org/uniprot/Q9ZS18 Q9ZS18]
+
−
** [http://www.uniprot.org/uniprot/Q9ZS16 Q9ZS16]
+
−
** [http://www.uniprot.org/uniprot/Q9SB97 Q9SB97]
+
−
** [http://www.uniprot.org/uniprot/Q9ZS17 Q9ZS17]
+
−
** [http://www.uniprot.org/uniprot/Q9ZRR6 Q9ZRR6]
+
−
** [http://www.uniprot.org/uniprot/P20432 P20432]
+
−
** [http://www.uniprot.org/uniprot/P14942 P14942]
+
−
** [http://www.uniprot.org/uniprot/P08010 P08010]
+
−
** [http://www.uniprot.org/uniprot/P04906 P04906]
+
−
** [http://www.uniprot.org/uniprot/P12653 P12653]
+
−
** [http://www.uniprot.org/uniprot/P04907 P04907]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Thioredoxin-like fold}}
+
{{#set: common name=riboflavin kinase}}
−
{{#set: common name=Glutathione S-transferase, N-terminal}}
+
{{#set: ec number=EC-2.7.1.26}}
−
{{#set: common name=Glutathione S-transferase, C-terminal-like}}
+
{{#set: gene associated=Ec-04_001490|Ec-04_004280|Ec-10_002950|Ec-14_005260}}
−
{{#set: common name=Membrane associated eicosanoid/glutathione metabolism-like domain}}
+
{{#set: in pathway=PWY66-366|PWY-6168|RIBOSYN2-PWY|PWY-5523}}
−
{{#set: common name=Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: common name=DSBA-like thioredoxin domain}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
−
{{#set: common name=Glutathione S-transferase (GST)}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: common name=putative Glutathione S-transferase}}
+
−
{{#set: common name=Glutathione S-transferase}}
+
−
{{#set: ec number=EC-2.5.1.18}}
+
−
{{#set: gene associated=Ec-13_002370|Ec-13_002360|Ec-09_003670|Ec-16_001680|Ec-00_008870|Ec-06_002520|Ec-27_000390|Ec-10_001330|Ec-20_001950|Ec-27_000400|Ec-00_008380|Ec-00_008370|Ec-06_008030|Ec-24_001030|Ec-18_001510|Ec-00_000320|Ec-13_000340|Ec-00_008360|Ec-00_008890|Ec-11_002590}}
+
−
{{#set: in pathway=PWY-6842|PWY-4061}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Latest revision as of 19:36, 21 March 2018

Reaction RIBOFLAVINKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • riboflavin kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 riboflavin[c] + 1 ATP[c] => 1 ADP[c] + 1 H+[c] + 1 FMN[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-366, flavin biosynthesis IV (mammalian): PWY66-366
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5523, 5,6-dimethylbenzimidazole biosynthesis I (aerobic): PWY-5523
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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