Difference between revisions of "DUTP-PYROP-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.178-RXN 1.1.1.178-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.or...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expa...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.178-RXN 1.1.1.178-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.178 EC-1.1.1.178]
+
** [http://enzyme.expasy.org/EC/3.6.1.19 EC-3.6.1.19]
 +
** [http://enzyme.expasy.org/EC/3.6.1.23 EC-3.6.1.23]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[2-METHYL-3-HYDROXY-BUTYRYL-COA]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[2-METHYL-ACETO-ACETYL-COA]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[DUTP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[DUMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 (2S,3S)-3-hydroxy-2-methylbutanoyl-CoA[c] '''<=>''' 1 H+[c] '''+''' 1 2-methylacetoacetyl-CoA[c] '''+''' 1 NADH[c]
+
** 1 H2O[c] '''+''' 1 dUTP[c] '''=>''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 dUMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-13_002810]]
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5109]], 2-methylbutanoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5109 PWY-5109]
+
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7206 PWY-7206]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[ILEUDEG-PWY]], L-isoleucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ILEUDEG-PWY ILEUDEG-PWY]
+
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''14''' reactions found over '''17''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-aragem]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13281 13281]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10248 10248]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04203 R04203]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
−
{{#set: ec number=EC-1.1.1.178}}
+
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
−
{{#set: in pathway=PWY-5109|ILEUDEG-PWY}}
+
** [http://www.uniprot.org/uniprot/P33316 P33316]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/O15923 O15923]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
−
{{#set: reconstruction source=esiliculosus_genome}}
+
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
 +
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
 +
** [http://www.uniprot.org/uniprot/P43792 P43792]
 +
** [http://www.uniprot.org/uniprot/P32518 P32518]
 +
** [http://www.uniprot.org/uniprot/P68635 P68635]
 +
** [http://www.uniprot.org/uniprot/P68634 P68634]
 +
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
 +
** [http://www.uniprot.org/uniprot/P03195 P03195]
 +
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
 +
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
 +
** [http://www.uniprot.org/uniprot/P33317 P33317]
 +
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
 +
** [http://www.uniprot.org/uniprot/P43058 P43058]
 +
** [http://www.uniprot.org/uniprot/O80091 O80091]
 +
** [http://www.uniprot.org/uniprot/O36404 O36404]
 +
** [http://www.uniprot.org/uniprot/O41033 O41033]
 +
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
 +
** [http://www.uniprot.org/uniprot/O39251 O39251]
 +
** [http://www.uniprot.org/uniprot/O01934 O01934]
 +
** [http://www.uniprot.org/uniprot/P10234 P10234]
 +
** [http://www.uniprot.org/uniprot/P06968 P06968]
 +
** [http://www.uniprot.org/uniprot/P09254 P09254]
 +
** [http://www.uniprot.org/uniprot/P28892 P28892]
 +
** [http://www.uniprot.org/uniprot/P28893 P28893]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-3.6.1.19}}
 +
{{#set: ec number=EC-3.6.1.23}}
 +
{{#set: gene associated=Ec-13_002810}}
 +
{{#set: in pathway=PWY-7206|PWY-7184|PWY-7187|PWY-6545|PWY0-166}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:38, 21 March 2018

Reaction DUTP-PYROP-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 dUTP[c] => 1 H+[c] + 1 diphosphate[c] + 1 dUMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7206, pyrimidine deoxyribonucleotides dephosphorylation: PWY-7206
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 14 reactions found over 17 reactions in the full pathway

Reconstruction information

External links





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