Difference between revisions of "RXN-16135"

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(Created page with "Category:Gene == Gene Ec-19_003170 == * left end position: ** 3436300 * transcription direction: ** NEGATIVE * right end position: ** 3447975 * centisome position: ** 57.5...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16135 RXN-16135] == * direction: ** LEFT-TO-RIGHT * common name: ** ClpP/crotonase-like domain...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-19_003170 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16135 RXN-16135] ==
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* left end position:
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* direction:
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** 3436300
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** ClpP/crotonase-like domain
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* right end position:
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** Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
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** 3447975
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** enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
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* centisome position:
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* ec number:
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** 57.552834   
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** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0367_0011
 
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** Esi0367_0011
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[5.3.4.1-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[WATER]][c] '''+''' 1 [[CPD-17386]][c] '''=>''' 1 [[CPD-17387]][c]
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***go-term
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* With common name(s):
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* [[DISULISOM-RXN]]
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** 1 H2O[c] '''+''' 1 (2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA[c] '''=>''' 1 (3S)-hydroxy-(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c]
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** esiliculosus_genome
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***go-term
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-16_003560]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-14_006530]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-06_001380]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-16_001250]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
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** '''14''' reactions found over '''14''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3436300}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=ClpP/crotonase-like domain}}
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{{#set: right end position=3447975}}
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{{#set: common name=Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ}}
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{{#set: centisome position=57.552834    }}
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{{#set: common name=enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase}}
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{{#set: common name=Esi_0367_0011|Esi0367_0011}}
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{{#set: ec number=EC-4.2.1.17}}
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{{#set: reaction associated=5.3.4.1-RXN|DISULISOM-RXN}}
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{{#set: gene associated=Ec-16_003560|Ec-14_006530|Ec-06_001380|Ec-16_001250}}
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{{#set: in pathway=PWY-7606}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:38, 21 March 2018

Reaction RXN-16135

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ClpP/crotonase-like domain
    • Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
    • enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 (2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA[c] => 1 (3S)-hydroxy-(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 14 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-16135&oldid=28332"