Difference between revisions of "RXN1G-1437"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] == * direction: ** LEFT-TO-RIGHT * common name: ** Isopentenyl-diphosphate del...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-1437 RXN1G-1437] == * direction: ** LEFT-TO-RIGHT * common name: ** Trehalose 6-phosphate syn...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-1437 RXN1G-1437] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
+
** Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase
 +
** HAD-like domain
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.103 EC-2.5.1.103]
+
** [http://enzyme.expasy.org/EC/3.1.3.12 EC-3.1.3.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[FARNESYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-465]][c]
+
** 1 [[CPD1G-772]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CPD1G-1346]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 (2E,6E)-farnesyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 presqualene diphosphate[c]
+
** 1 6-O-trans-methoxy-mycolyl-trehalose 6-phosphate[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 trehalose-trans-methoxy-mono-mycolate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-11_001030]]
+
* Gene: [[Ec-08_005270]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-05_002680]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-06_003140]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-24_004390]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-22_003320]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-20_003980]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-19_005250]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-11_002540]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
+
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
−
** '''1''' reactions found over '''14''' reactions in the full pathway
+
** '''30''' reactions found over '''182''' reactions in the full pathway
−
* [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6767 PWY-6767]
+
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-5875]], staphyloxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5875 PWY-5875]
+
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-6105]], botryococcenes and methylated squalene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6105 PWY-6105]
+
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O69445 O69445]
 
−
** [http://www.uniprot.org/uniprot/P36596 P36596]
 
−
** [http://www.uniprot.org/uniprot/O65688 O65688]
 
−
** [http://www.uniprot.org/uniprot/O23118 O23118]
 
−
** [http://www.uniprot.org/uniprot/O22107 O22107]
 
−
** [http://www.uniprot.org/uniprot/Q40472 Q40472]
 
−
** [http://www.uniprot.org/uniprot/O22106 O22106]
 
−
** [http://www.uniprot.org/uniprot/P53800 P53800]
 
−
** [http://www.uniprot.org/uniprot/P53799 P53799]
 
−
** [http://www.uniprot.org/uniprot/P53798 P53798]
 
−
** [http://www.uniprot.org/uniprot/P29704 P29704]
 
−
** [http://www.uniprot.org/uniprot/Q04903 Q04903]
 
−
** [http://www.uniprot.org/uniprot/Q42761 Q42761]
 
−
** [http://www.uniprot.org/uniprot/Q42760 Q42760]
 
−
** [http://www.uniprot.org/uniprot/P37268 P37268]
 
−
** [http://www.uniprot.org/uniprot/Q02769 Q02769]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs}}
+
{{#set: common name=Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase}}
−
{{#set: ec number=EC-2.5.1.103}}
+
{{#set: common name=HAD-like domain}}
−
{{#set: gene associated=Ec-11_001030}}
+
{{#set: ec number=EC-3.1.3.12}}
−
{{#set: in pathway=PWY-7072|PWY-6767|PWY-5875|PWY-6105}}
+
{{#set: gene associated=Ec-08_005270|Ec-05_002680|Ec-06_003140|Ec-24_004390|Ec-22_003320|Ec-20_003980|Ec-19_005250|Ec-11_002540}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWYG-321}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:38, 21 March 2018

Reaction RXN1G-1437

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase
    • HAD-like domain
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 6-O-trans-methoxy-mycolyl-trehalose 6-phosphate[c] + 1 H2O[c] => 1 phosphate[c] + 1 trehalose-trans-methoxy-mono-mycolate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWYG-321, mycolate biosynthesis: PWYG-321
    • 30 reactions found over 182 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN1G-1437&oldid=28349"