Difference between revisions of "Ec-28 003740"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DETHIOBIOTIN-SYN-RXN DETHIOBIOTIN-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Bifun...")
 
(Created page with "Category:Gene == Gene Ec-28_003740 == * left end position: ** 3587564 * transcription direction: ** POSITIVE * right end position: ** 3594417 * centisome position: ** 94.6...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DETHIOBIOTIN-SYN-RXN DETHIOBIOTIN-SYN-RXN] ==
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== Gene Ec-28_003740 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3587564
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* common name:
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* transcription direction:
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** Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/6.3.3.3 EC-6.3.3.3]
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** 3594417
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* centisome position:
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** 94.68317   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0009_0009
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** Esi0009_0009
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PEROXID-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[DIAMINONONANOATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''=>''' 1 [[DETHIOBIOTIN]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 3 [[PROTON]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 ATP[c] '''+''' 1 7,8-diaminopelargonate[c] '''+''' 1 CO2[c] '''=>''' 1 dethiobiotin[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 3 H+[c]
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* Reaction: [[RXN-14240]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-15288]]
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* [[Ec-01_005750]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: go-term
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-17352]]
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== Pathways ==
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
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*** Assignment: go-term
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* Reaction: [[RXN-8635]]
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* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380]
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** Source: [[annotation-esiliculosus_genome]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** Assignment: go-term
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== Reconstruction information  ==
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== Pathways associated ==
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* [[annotation]]:
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* [[PWY-7214]]
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** [[pathwaytools]]:
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* [[PWY-6824]]
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*** [[esiliculosus_genome]]
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* [[PWY-7445]]
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* [[PWY-5469]]
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* [[PWY-5466]]
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* [[PWY-5461]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3587564}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15805 15805]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3594417}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03182 R03182]
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{{#set: centisome position=94.68317    }}
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* UNIPROT:
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{{#set: common name=Esi_0009_0009|Esi0009_0009}}
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** [http://www.uniprot.org/uniprot/Q9JV95 Q9JV95]
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{{#set: reaction associated=PEROXID-RXN|RXN-14240|RXN-15288|RXN-17352|RXN-8635}}
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** [http://www.uniprot.org/uniprot/Q9PIJ1 Q9PIJ1]
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{{#set: pathway associated=PWY-7214|PWY-6824|PWY-7445|PWY-5469|PWY-5466|PWY-5461}}
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** [http://www.uniprot.org/uniprot/P46397 P46397]
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** [http://www.uniprot.org/uniprot/P22818 P22818]
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** [http://www.uniprot.org/uniprot/P13000 P13000]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase}}
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{{#set: ec number=EC-6.3.3.3}}
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{{#set: gene associated=Ec-01_005750}}
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{{#set: in pathway=PWY0-1507|PWY-7380}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 19:38, 21 March 2018

Gene Ec-28_003740

  • left end position:
    • 3587564
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3594417
  • centisome position:
    • 94.68317
  • Synonym(s):
    • Esi_0009_0009
    • Esi0009_0009

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-28_003740&oldid=28368"