Difference between revisions of "RXN-17252"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] == * direction: ** LEFT-TO-RIGHT * common name: ** proline,2-oxoglutarate-...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17252 RXN-17252] == * direction: ** LEFT-TO-RIGHT * common name: ** Pheophorbide a oxygenase *...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17252 RXN-17252] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)
+
** Pheophorbide a oxygenase
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
+
 
* Synonym(s):
 
* Synonym(s):
−
** prolyl hydroxylase
 
−
** prolyl 4-hydroxylase
 
−
** proline,2-oxoglutarate 4-dioxygenase
 
−
** proline hydroxylase
 
−
** protocollagen hydroxylase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[4-HYDROXY-L-PROLINE]][c]
+
** 2 [[PROTON]][c] '''+''' 1 [[CPD-7061]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[CPD-18666]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''+''' 1 L-proline[c] '''=>''' 1 succinate[c] '''+''' 1 CO2[c] '''+''' 1 trans-4-hydroxy-L-proline[c]
+
** 2 H+[c] '''+''' 1 pheophorbide a[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 oxygen[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 H2O[c] '''+''' 1 epoxypheophorbide a[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-08_002170]]
+
* Gene: [[Ec-14_003590]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-07_001070]]
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*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[aragem]]
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* Gene: [[Ec-03_003240]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5098]], chlorophyll a degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5098 PWY-5098]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6927]], chlorophyll a degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6927 PWY-6927]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01252 R01252]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)}}
+
{{#set: common name=Pheophorbide a oxygenase}}
−
{{#set: ec number=EC-1.14.11}}
+
{{#set: gene associated=Ec-14_003590|Ec-03_003240}}
−
{{#set: common name=prolyl hydroxylase|prolyl 4-hydroxylase|proline,2-oxoglutarate 4-dioxygenase|proline hydroxylase|protocollagen hydroxylase}}
+
{{#set: in pathway=PWY-5098|PWY-6927}}
−
{{#set: gene associated=Ec-08_002170|Ec-07_001070}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+

Latest revision as of 19:42, 21 March 2018

Reaction RXN-17252

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pheophorbide a oxygenase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5098, chlorophyll a degradation I: PWY-5098
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6927, chlorophyll a degradation II: PWY-6927
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-17252&oldid=28846"