Difference between revisions of "VALINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=OCTAPRENYL-DIPHOSPHATE OCTAPRENYL-DIPHOSPHATE] == * smiles: ** CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CC...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=OCTAPRENYL-DIPHOSPHATE OCTAPRENYL-DIPHOSPHATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=IKKLDISSULFFQO-DJMILUHSSA-K
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* common name:
 
* common name:
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** all-trans-octaprenyl diphosphate
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** Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding
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* molecular weight:
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** Valine--tRNA ligase
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** 719.897   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.9 EC-6.1.1.9]
 
* Synonym(s):
 
* Synonym(s):
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** farnesylfarnesylgeranyl-PP
 
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** octaprenyl pyrophosphate
 
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** OPP
 
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** farnesylfarnesylgeraniol
 
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** octaprenyl diphosphate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[4OHBENZOATE-OCTAPRENYLTRANSFER-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PROTON]][c] '''+''' 1 [[VAL-tRNAs]][c] '''+''' 1 [[VAL]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-VAL-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 H+[c] '''+''' 1 a tRNAval[c] '''+''' 1 L-valine[c] '''+''' 1 ATP[c] '''=>''' 1 an L-valyl-[tRNAval][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-08_004480]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-12_005070]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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* RHEA:
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** [http://www.genome.jp/dbget-bin/www_bget?C04146 C04146]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10704 10704]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57711 57711]
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** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
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* BIGG : 43243
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* UNIPROT:
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P28350 P28350]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245331 25245331]
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** [http://www.uniprot.org/uniprot/P36420 P36420]
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* HMDB : HMDB01094
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** [http://www.uniprot.org/uniprot/P56000 P56000]
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{{#set: smiles=CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-]}}
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** [http://www.uniprot.org/uniprot/O51680 O51680]
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{{#set: inchi key=InChIKey=IKKLDISSULFFQO-DJMILUHSSA-K}}
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** [http://www.uniprot.org/uniprot/O67411 O67411]
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{{#set: common name=all-trans-octaprenyl diphosphate}}
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** [http://www.uniprot.org/uniprot/O83998 O83998]
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{{#set: molecular weight=719.897    }}
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** [http://www.uniprot.org/uniprot/Q9ZCN6 Q9ZCN6]
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{{#set: common name=farnesylfarnesylgeranyl-PP|octaprenyl pyrophosphate|OPP|farnesylfarnesylgeraniol|octaprenyl diphosphate}}
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** [http://www.uniprot.org/uniprot/Q9Z987 Q9Z987]
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{{#set: consumed by=4OHBENZOATE-OCTAPRENYLTRANSFER-RXN}}
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** [http://www.uniprot.org/uniprot/Q9X2D7 Q9X2D7]
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** [http://www.uniprot.org/uniprot/Q9ZK61 Q9ZK61]
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** [http://www.uniprot.org/uniprot/Q9CDP6 Q9CDP6]
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** [http://www.uniprot.org/uniprot/Q58413 Q58413]
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** [http://www.uniprot.org/uniprot/P43834 P43834]
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** [http://www.uniprot.org/uniprot/Q9PPE4 Q9PPE4]
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** [http://www.uniprot.org/uniprot/O84304 O84304]
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** [http://www.uniprot.org/uniprot/P47576 P47576]
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** [http://www.uniprot.org/uniprot/Q94678 Q94678]
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** [http://www.uniprot.org/uniprot/Q04462 Q04462]
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** [http://www.uniprot.org/uniprot/P26640 P26640]
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** [http://www.uniprot.org/uniprot/Q05873 Q05873]
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** [http://www.uniprot.org/uniprot/Q26177 Q26177]
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** [http://www.uniprot.org/uniprot/P75304 P75304]
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** [http://www.uniprot.org/uniprot/Q49021 Q49021]
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** [http://www.uniprot.org/uniprot/P11931 P11931]
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** [http://www.uniprot.org/uniprot/P07806 P07806]
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** [http://www.uniprot.org/uniprot/P07118 P07118]
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** [http://www.uniprot.org/uniprot/O77443 O77443]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding}}
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{{#set: common name=Valine--tRNA ligase}}
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{{#set: ec number=EC-6.1.1.9}}
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{{#set: gene associated=Ec-08_004480|Ec-12_005070}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:47, 21 March 2018

Reaction VALINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding
    • Valine--tRNA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 a tRNAval[c] + 1 L-valine[c] + 1 ATP[c] => 1 an L-valyl-[tRNAval][c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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