Difference between revisions of "ISOCITDEH-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** agmatinase, partial **...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] == * direction: ** REVERSIBLE * common name: ** isocitrate dehydrogena...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** agmatinase, partial
+
** isocitrate dehydrogenase (NADP+)
−
** Ureohydrolase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.3.11 EC-3.5.3.11]
+
** [http://enzyme.expasy.org/EC/1.1.1.42 EC-1.1.1.42]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
+
** 1 [[THREO-DS-ISO-CITRATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 agmatine[c] '''+''' 1 H2O[c] '''=>''' 1 putrescine[c] '''+''' 1 urea[c]
+
** 1 D-threo-isocitrate[c] '''+''' 1 NADP+[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 CO2[c] '''+''' 1 NADPH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-22_003700]]
+
* Gene: [[Ec-11_003080]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: GO-TERM
−
* [[Ec-17_004310]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-17_004300]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
+
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-823 PWY0-823]
+
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-40]], putrescine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-40 PWY-40]
+
* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7268 PWY-7268]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''8''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A10759 A10759]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43294 A43294]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43934 A43934]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49341 A49341]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54756 A54756]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55591 A55591]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B49341 B49341]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64523 C64523]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81399 C81399]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCBYIS DCBYIS]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCECIS DCECIS]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69330 G69330]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64389 H64389]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81877 H81877]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H86708 H86708]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40382 I40382]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40719 I40719]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4600 JC4600]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S28423 S28423]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33612 S33612]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33859 S33859]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S47013 S47013]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51419 S51419]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57499 S57499]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62921 S62921]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S65065 S65065]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74684 S74684]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04355 T04355]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04356 T04356]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07402 T07402]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09619 T09619]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39058 T39058]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44658 T44658]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46280 T46280]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P60654 P60654]
+
** [http://www.uniprot.org/uniprot/P16100 P16100]
−
** [http://www.uniprot.org/uniprot/P60653 P60653]
+
** [http://www.uniprot.org/uniprot/P33198 P33198]
−
** [http://www.uniprot.org/uniprot/P60651 P60651]
+
** [http://www.uniprot.org/uniprot/P41561 P41561]
−
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
+
** [http://www.uniprot.org/uniprot/P41562 P41562]
−
** [http://www.uniprot.org/uniprot/P73270 P73270]
+
** [http://www.uniprot.org/uniprot/P50214 P50214]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/P41560 P41560]
−
{{#set: common name=agmatinase, partial}}
+
** [http://www.uniprot.org/uniprot/P56063 P56063]
−
{{#set: common name=Ureohydrolase}}
+
** [http://www.uniprot.org/uniprot/Q9PHY3 Q9PHY3]
−
{{#set: ec number=EC-3.5.3.11}}
+
** [http://www.uniprot.org/uniprot/P21954 P21954]
−
{{#set: gene associated=Ec-22_003700|Ec-17_004310|Ec-17_004300}}
+
** [http://www.uniprot.org/uniprot/P08200 P08200]
−
{{#set: in pathway=PWY-6305|PWY0-823|PWY-40}}
+
** [http://www.uniprot.org/uniprot/O29610 O29610]
 +
** [http://www.uniprot.org/uniprot/Q9JUV7 Q9JUV7]
 +
** [http://www.uniprot.org/uniprot/Q9CHQ4 Q9CHQ4]
 +
** [http://www.uniprot.org/uniprot/P39126 P39126]
 +
** [http://www.uniprot.org/uniprot/P50216 P50216]
 +
** [http://www.uniprot.org/uniprot/P50215 P50215]
 +
** [http://www.uniprot.org/uniprot/Q04467 Q04467]
 +
** [http://www.uniprot.org/uniprot/P50217 P50217]
 +
** [http://www.uniprot.org/uniprot/P41939 P41939]
 +
** [http://www.uniprot.org/uniprot/P48735 P48735]
 +
** [http://www.uniprot.org/uniprot/P53982 P53982]
 +
** [http://www.uniprot.org/uniprot/P50218 P50218]
 +
** [http://www.uniprot.org/uniprot/O65853 O65853]
 +
** [http://www.uniprot.org/uniprot/Q40345 Q40345]
 +
** [http://www.uniprot.org/uniprot/O14254 O14254]
 +
** [http://www.uniprot.org/uniprot/O75874 O75874]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=isocitrate dehydrogenase (NADP+)}}
 +
{{#set: ec number=EC-1.1.1.42}}
 +
{{#set: gene associated=Ec-11_003080}}
 +
{{#set: in pathway=PWY-5913|REDCITCYC|PWY-7268|P23-PWY|P105-PWY|PWY-6969|FERMENTATION-PWY|PWY-6728|PWY-6549|PWY-7254|PWY-7124|TCA}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:48, 21 March 2018

Reaction ISOCITDEH-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • isocitrate dehydrogenase (NADP+)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-7268, NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): PWY-7268
    • 4 reactions found over 5 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 8 reactions found over 16 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 8 reactions found over 10 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=ISOCITDEH-RXN&oldid=29386"