Difference between revisions of "MALIC-NADP-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] == * direction: ** REVERSIBLE * common name: ** xanthine dehydrogenase * ec numb...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALIC-NADP-RXN MALIC-NADP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Malic oxidoreduct...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALIC-NADP-RXN MALIC-NADP-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** xanthine dehydrogenase
+
** Malic oxidoreductase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.17.1.4 EC-1.17.1.4]
+
** [http://enzyme.expasy.org/EC/1.1.1.40 EC-1.1.1.40]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[XANTHINE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[URATE]][c]
+
** 1 [[NADP]][c] '''+''' 1 [[MAL]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 xanthine[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''<=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 urate[c]
+
** 1 NADP+[c] '''+''' 1 (S)-malate[c] '''=>''' 1 pyruvate[c] '''+''' 1 CO2[c] '''+''' 1 NADPH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-20_000230]]
+
* Gene: [[Ec-01_003680]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[aragem]]
+
** Source: [[orthology-aragem]]
−
* [[Ec-20_000210]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[aragem]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
+
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
+
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
+
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
−
** '''4''' reactions found over '''17''' reactions in the full pathway
+
** '''13''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
+
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
+
−
** '''8''' reactions found over '''24''' reactions in the full pathway
+
−
* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6999]], theophylline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6999 PWY-6999]
+
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-5695]], urate biosynthesis/inosine 5'-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5695 PWY-5695]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6538]], caffeine degradation III (bacteria, via demethylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6538 PWY-6538]
+
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-aragem]]
−
*** [[aragem]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16669 16669]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18253 18253]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02103 R02103]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00216 R00216]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q62637 Q62637]
+
** [http://www.uniprot.org/uniprot/P12628 P12628]
−
** [http://www.uniprot.org/uniprot/P22811 P22811]
+
** [http://www.uniprot.org/uniprot/P06801 P06801]
−
** [http://www.uniprot.org/uniprot/Q12553 Q12553]
+
** [http://www.uniprot.org/uniprot/P13697 P13697]
−
** [http://www.uniprot.org/uniprot/P08793 P08793]
+
** [http://www.uniprot.org/uniprot/P16243 P16243]
−
** [http://www.uniprot.org/uniprot/P10351 P10351]
+
** [http://www.uniprot.org/uniprot/O48656 O48656]
−
** [http://www.uniprot.org/uniprot/Q7M0I7 Q7M0I7]
+
** [http://www.uniprot.org/uniprot/P22178 P22178]
−
** [http://www.uniprot.org/uniprot/Q7M0I8 Q7M0I8]
+
** [http://www.uniprot.org/uniprot/P93139 P93139]
−
** [http://www.uniprot.org/uniprot/Q7M0I9 Q7M0I9]
+
** [http://www.uniprot.org/uniprot/P34105 P34105]
−
** [http://www.uniprot.org/uniprot/P47990 P47990]
+
** [http://www.uniprot.org/uniprot/P28227 P28227]
−
** [http://www.uniprot.org/uniprot/P47989 P47989]
+
** [http://www.uniprot.org/uniprot/P36444 P36444]
−
** [http://www.uniprot.org/uniprot/Q00519 Q00519]
+
** [http://www.uniprot.org/uniprot/P40927 P40927]
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.uniprot.org/uniprot/P37223 P37223]
−
{{#set: common name=xanthine dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/P48163 P48163]
−
{{#set: ec number=EC-1.17.1.4}}
+
** [http://www.uniprot.org/uniprot/Q16798 Q16798]
−
{{#set: gene associated=Ec-20_000230|Ec-20_000210}}
+
** [http://www.uniprot.org/uniprot/O50015 O50015]
−
{{#set: in pathway=PWY-6607|SALVADEHYPOX-PWY|P164-PWY|PWY-6596|PWY-5497|PWY-6606|PWY-6999|PWY-6608|PWY-5695|PWY-6538}}
+
** [http://www.uniprot.org/uniprot/O04935 O04935]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/O04936 O04936]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P37222 P37222]
−
{{#set: reconstruction source=aragem}}
+
** [http://www.uniprot.org/uniprot/Q42888 Q42888]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q42889 Q42889]
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: common name=Malic oxidoreductase}}
 +
{{#set: ec number=EC-1.1.1.40}}
 +
{{#set: gene associated=Ec-01_003680}}
 +
{{#set: in pathway=PWY-241|PWY-7117|GLUCONEO-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:50, 21 March 2018

Reaction MALIC-NADP-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Malic oxidoreductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADP+[c] + 1 (S)-malate[c] => 1 pyruvate[c] + 1 CO2[c] + 1 NADPH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type: PWY-241
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
    • 9 reactions found over 10 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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