Difference between revisions of "PYRAMKIN-RXN"

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(Created page with "Category:Gene == Gene Ec-01_005920 == * left end position: ** 5142200 * transcription direction: ** NEGATIVE * right end position: ** 5152486 * centisome position: ** 49.8...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRAMKIN-RXN PYRAMKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyridoxamine kinase *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-01_005920 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRAMKIN-RXN PYRAMKIN-RXN] ==
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* left end position:
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* direction:
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** 5142200
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** Pyridoxamine kinase
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* right end position:
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* ec number:
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** 5152486
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** [http://enzyme.expasy.org/EC/2.7.1.35 EC-2.7.1.35]
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* centisome position:
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** 49.83315   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0297_0041
 
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** Esi0297_0041
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PHOSPHASERSYN-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[PYRIDOXAMINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 pyridoxamine[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 pyridoxamine 5'-phosphate[c]
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* [[PHOSLIPSYN2-PWY]]
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* [[PWY-5669]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-02_001230]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=5142200}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25104 25104]
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{{#set: right end position=5152486}}
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* LIGAND-RXN:
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{{#set: centisome position=49.83315    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R02493 R02493]
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{{#set: common name=Esi_0297_0041|Esi0297_0041}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=PHOSPHASERSYN-RXN}}
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{{#set: common name=Pyridoxamine kinase}}
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{{#set: pathway associated=PHOSLIPSYN2-PWY|PWY-5669}}
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{{#set: ec number=EC-2.7.1.35}}
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{{#set: gene associated=Ec-02_001230}}
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{{#set: in pathway=PWY-7204|PLPSAL-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:54, 21 March 2018

Reaction PYRAMKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyridoxamine kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 pyridoxamine[c] + 1 ATP[c] => 1 H+[c] + 1 ADP[c] + 1 pyridoxamine 5'-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants): PWY-7204
    • 5 reactions found over 9 reactions in the full pathway
  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I: PLPSAL-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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