Difference between revisions of "RXN-2425"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2425 RXN-2425] == * direction: ** REVERSIBLE * common name: ** ClpP/crotonase-like domain ** Be...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2425 RXN-2425] == * direction: ** REVERSIBLE * common name: ** ClpP/crotonase-like domain ** Be...") |
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== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[3-HYDROXYADIPYL-COA]][c] '''<=>''' 1 [[ | + | ** 1 [[3-HYDROXYADIPYL-COA]][c] '''<=>''' 1 [[TRANS-23-DEHYDROADIPYL-COA]][c] '''+''' 1 [[WATER]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 (3S)-hydroxyadipyl-CoA[c] '''<=>''' 1 | + | ** 1 (3S)-hydroxyadipyl-CoA[c] '''<=>''' 1 trans-2,3-dehydroadipyl-coA[c] '''+''' 1 H2O[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[Ec-17_000320]] | + | * Gene: [[Ec-17_000320]] |
| − | ** [[ | + | ** Source: [[orthology-aragem]] |
| − | * [[Ec-16_003560]] | + | * Gene: [[Ec-16_003560]] |
| − | ** | + | ** Source: [[annotation-esiliculosus_genome]] |
| − | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
| − | * [[Ec- | + | * Gene: [[Ec-16_001250]] |
| − | ** | + | ** Source: [[annotation-esiliculosus_genome]] |
| − | *** | + | *** Assignment: EC-NUMBER |
| − | * | + | * Gene: [[Ec-14_006530]] |
| − | * [[ | + | ** Source: [[annotation-esiliculosus_genome]] |
| − | ** | + | *** Assignment: AUTOMATED-NAME-MATCH |
| − | ** | + | ** Source: [[orthology-aragem]] |
| − | * [[Ec-06_001380]] | + | * Gene: [[Ec-06_001380]] |
| − | ** | + | ** Source: [[annotation-esiliculosus_genome]] |
| − | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
== Pathways == | == Pathways == | ||
* [[PWY-1361]], benzoyl-CoA degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1361 PWY-1361] | * [[PWY-1361]], benzoyl-CoA degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1361 PWY-1361] | ||
| Line 40: | Line 40: | ||
** '''2''' reactions found over '''9''' reactions in the full pathway | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[orthology]] | + | * Category: [[orthology]] |
| − | ** [[ | + | ** Source: [[orthology-aragem]] |
| − | *** [[ | + | *** Tool: [[pantograph]] |
| − | * [[annotation]] | + | * Category: [[annotation]] |
| − | ** [[ | + | ** Source: [[annotation-esiliculosus_genome]] |
| − | *** [[ | + | *** Tool: [[pathwaytools]] |
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| Line 56: | Line 56: | ||
{{#set: common name=enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase}} | {{#set: common name=enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase}} | ||
{{#set: ec number=EC-4.2.1.17}} | {{#set: ec number=EC-4.2.1.17}} | ||
| − | {{#set: gene associated=Ec-17_000320|Ec-16_003560|Ec- | + | {{#set: gene associated=Ec-17_000320|Ec-16_003560|Ec-16_001250|Ec-14_006530|Ec-06_001380}} |
{{#set: in pathway=PWY-1361|PWY0-321}} | {{#set: in pathway=PWY-1361|PWY0-321}} | ||
| − | {{#set: reconstruction category=orthology | + | {{#set: reconstruction category=orthology|annotation}} |
| − | + | {{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}} | |
| − | {{#set: reconstruction source=aragem | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
| − | + | ||
| − | {{#set: reconstruction tool=pathwaytools | + | |
| − | + | ||
Latest revision as of 19:56, 21 March 2018
Contents
Reaction RXN-2425
- direction:
- REVERSIBLE
- common name:
- ClpP/crotonase-like domain
- Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
- enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 3-HYDROXYADIPYL-COA[c] <=> 1 TRANS-23-DEHYDROADIPYL-COA[c] + 1 WATER[c]
- With common name(s):
- 1 (3S)-hydroxyadipyl-CoA[c] <=> 1 trans-2,3-dehydroadipyl-coA[c] + 1 H2O[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Ec-17_000320
- Source: orthology-aragem
- Gene: Ec-16_003560
- Source: annotation-esiliculosus_genome
- Assignment: EC-NUMBER
- Source: annotation-esiliculosus_genome
- Gene: Ec-16_001250
- Source: annotation-esiliculosus_genome
- Assignment: EC-NUMBER
- Source: annotation-esiliculosus_genome
- Gene: Ec-14_006530
- Source: annotation-esiliculosus_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: orthology-aragem
- Source: annotation-esiliculosus_genome
- Gene: Ec-06_001380
- Source: annotation-esiliculosus_genome
- Assignment: EC-NUMBER
- Source: annotation-esiliculosus_genome
Pathways
- PWY-1361, benzoyl-CoA degradation I (aerobic): PWY-1361
- 2 reactions found over 7 reactions in the full pathway
- PWY0-321, phenylacetate degradation I (aerobic): PWY0-321
- 2 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-aragem
- Tool: pantograph
- Source: orthology-aragem
- Category: annotation
- Source: annotation-esiliculosus_genome
- Tool: pathwaytools
- Source: annotation-esiliculosus_genome
External links
