Difference between revisions of "HEMN-RXN"

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(Created page with "Category:Gene == Gene Ec-09_002930 == * left end position: ** 3363542 * transcription direction: ** POSITIVE * right end position: ** 3376925 * centisome position: ** 59.9...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Radical SAM * ec number: ** [...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-09_002930 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] ==
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* left end position:
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* direction:
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** 3363542
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Radical SAM
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* right end position:
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* ec number:
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** 3376925
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** [http://enzyme.expasy.org/EC/1.3.98.c EC-1.3.98.c]
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* centisome position:
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** 59.92242   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0021_0166
 
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** Esi0021_0166
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[UDPNACETYLMURAMATEDEHYDROG-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[CH33ADO]][c]
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***go-term
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* With common name(s):
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== Pathways associated ==
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** 1 coproporphyrinogen III[c] '''+''' 2 S-adenosyl-L-methionine[c] '''=>''' 1 protoporphyrinogen IX[c] '''+''' 2 L-methionine[c] '''+''' 2 CO2[c] '''+''' 2 5'-deoxyadenosine[c]
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* [[PWY-6386]]
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* [[PWY-6387]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-19_002210]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-20_000950]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-26_001240]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-14_004300]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-26_002590]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3363542}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15425 15425]
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{{#set: right end position=3376925}}
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* LIGAND-RXN:
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{{#set: centisome position=59.92242    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R06895 R06895]
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{{#set: common name=Esi_0021_0166|Esi0021_0166}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=UDPNACETYLMURAMATEDEHYDROG-RXN}}
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{{#set: common name=Radical SAM}}
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{{#set: pathway associated=PWY-6386|PWY-6387}}
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{{#set: ec number=EC-1.3.98.c}}
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{{#set: gene associated=Ec-19_002210|Ec-20_000950|Ec-26_001240|Ec-14_004300|Ec-26_002590}}
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{{#set: in pathway=PWY-5531|HEMESYN2-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:57, 21 March 2018

Reaction HEMN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Radical SAM
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 4 reactions found over 9 reactions in the full pathway
  • HEMESYN2-PWY, heme biosynthesis II (anaerobic): HEMESYN2-PWY
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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