Difference between revisions of "RXN-11999"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPKIN-RXN UDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate ki...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11999 RXN-11999] == * direction: ** LEFT-TO-RIGHT * common name: ** Carotenoid oxygenase * Syno...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPKIN-RXN UDPKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11999 RXN-11999] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** nucleoside diphosphate kinase
+
** Carotenoid oxygenase
−
** Nucleoside diphosphate kinase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[UDP]][c] '''=>''' 1 [[UTP]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[CPD-12932]][c] '''=>''' 1 [[CPD-12936]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 UDP[c] '''=>''' 1 UTP[c] '''+''' 1 ADP[c]
+
** 1 all-trans-3,4-didehydrolycopene[c] '''=>''' 1 apo-4'-lycopenal[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-11_004330]]
+
* Gene: [[Ec-21_004930]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-20_002250]]
−
* [[Ec-03_001380]]
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** Source: [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
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*** Assignment: AUTOMATED-NAME-MATCH
−
***GO-TERM
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* Gene: [[Ec-06_002810]]
−
* [[Ec-22_003280]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***GO-TERM
+
* Gene: [[Ec-06_002830]]
−
* [[Ec-11_005170]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***GO-TERM
+
* Gene: [[Ec-18_002140]]
−
* [[Ec-07_000140]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***GO-TERM
+
−
* [[Ec-26_003930]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-04_001140]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
** [[pantograph]]-[[aragem]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7176]], UTP and CTP de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7176 PWY-7176]
+
* [[PWY-6681]], neurosporaxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6681 PWY-6681]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25098 25098]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00156 R00156]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=nucleoside diphosphate kinase}}
+
{{#set: common name=Carotenoid oxygenase}}
−
{{#set: common name=Nucleoside diphosphate kinase}}
+
{{#set: gene associated=Ec-21_004930|Ec-20_002250|Ec-06_002810|Ec-06_002830|Ec-18_002140}}
−
{{#set: ec number=EC-2.7.4.6}}
+
{{#set: in pathway=PWY-6681}}
−
{{#set: gene associated=Ec-11_004330|Ec-03_001380|Ec-22_003280|Ec-11_005170|Ec-07_000140|Ec-26_003930|Ec-04_001140}}
+
−
{{#set: in pathway=PWY-7176}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:57, 21 March 2018

Reaction RXN-11999

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Carotenoid oxygenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-3,4-didehydrolycopene[c] => 1 apo-4'-lycopenal[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6681, neurosporaxanthin biosynthesis: PWY-6681
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-11999&oldid=30545"