Difference between revisions of "PWY-5994"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-coA synthet...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33154 TAX-3...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33154 TAX-33154]
 
* common name:
 
* common name:
−
** long chain acyl-coA synthetase
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** palmitate biosynthesis I (animals and fungi)
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** long chain acyl-CoA synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
 +
** palmitic acid biosynthesis
 +
** de novo lipogenesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''20''' reactions found over '''31''' reactions in the full pathway
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** 1 [[CO-A]][c] '''+''' 1 [[CPD-3617]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-10267]][c] '''+''' 1 [[PPI]][c]
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* [[4.2.1.58-RXN]]
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* With common name(s):
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** 0 associated gene:
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** 1 coenzyme A[c] '''+''' 1 decanoate[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 decanoyl-CoA[c] '''+''' 1 diphosphate[c]
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** 1 reconstruction source(s) associated:
−
 
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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* [[4.2.1.61-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 0 associated gene:
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* [[Ec-12_008720]]
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** 1 reconstruction source(s) associated:
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** ESILICULOSUS_GENOME
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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***AUTOMATED-NAME-MATCH
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* [[RXN-9514]]
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* [[Ec-02_006430]]
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** 1 associated gene(s):
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** ESILICULOSUS_GENOME
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*** [[Ec-01_007100]]
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***AUTOMATED-NAME-MATCH
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** 1 reconstruction source(s) associated:
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* [[Ec-01_001560]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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* [[RXN-9515]]
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***AUTOMATED-NAME-MATCH
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** 0 associated gene:
−
* [[Ec-03_003710]]
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** 1 reconstruction source(s) associated:
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** ESILICULOSUS_GENOME
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*** [[annotation-esiliculosus_genome]]
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***AUTOMATED-NAME-MATCH
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* [[RXN-9518]]
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== Pathways  ==
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** 1 associated gene(s):
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* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
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*** [[Ec-01_007100]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-esiliculosus_genome]]
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* [[annotation]]:
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* [[RXN-9524]]
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** [[pathwaytools]]:
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** 1 associated gene(s):
−
*** [[esiliculosus_genome]]
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*** [[Ec-01_007100]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9528]]
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** 1 associated gene(s):
 +
*** [[Ec-01_007100]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9532]]
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** 1 associated gene(s):
 +
*** [[Ec-01_007100]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9533]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[RXN-9536]]
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** 1 associated gene(s):
 +
*** [[Ec-01_007100]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9537]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[RXN-9540]]
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** 1 associated gene(s):
 +
*** [[Ec-01_007100]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9549]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[RXN-9648]]
 +
** 4 associated gene(s):
 +
*** [[Ec-12_000650]]
 +
*** [[Ec-27_003480]]
 +
*** [[Ec-27_002090]]
 +
*** [[Ec-12_000640]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9650]]
 +
** 4 associated gene(s):
 +
*** [[Ec-12_000650]]
 +
*** [[Ec-12_000640]]
 +
*** [[Ec-27_002090]]
 +
*** [[Ec-27_003480]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9651]]
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** 4 associated gene(s):
 +
*** [[Ec-27_002090]]
 +
*** [[Ec-12_000650]]
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*** [[Ec-12_000640]]
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*** [[Ec-27_003480]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9652]]
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** 4 associated gene(s):
 +
*** [[Ec-27_003480]]
 +
*** [[Ec-12_000650]]
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*** [[Ec-27_002090]]
 +
*** [[Ec-12_000640]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9653]]
 +
** 4 associated gene(s):
 +
*** [[Ec-27_003480]]
 +
*** [[Ec-27_002090]]
 +
*** [[Ec-12_000640]]
 +
*** [[Ec-12_000650]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9654]]
 +
** 4 associated gene(s):
 +
*** [[Ec-12_000650]]
 +
*** [[Ec-27_003480]]
 +
*** [[Ec-27_002090]]
 +
*** [[Ec-12_000640]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9655]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.21-RXN 3.1.2.21-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.59-RXN 4.2.1.59-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PALMITOYL-COA-HYDROLASE-RXN PALMITOYL-COA-HYDROLASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9520 RXN-9520]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9521 RXN-9521]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9526 RXN-9526]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9530 RXN-9530]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9534 RXN-9534]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9538 RXN-9538]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9542 RXN-9542]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-9780 RXN3O-9780]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: taxonomic range=TAX-33154}}
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{{#set: common name=long chain acyl-coA synthetase}}
+
{{#set: common name=palmitate biosynthesis I (animals and fungi)}}
−
{{#set: common name=long chain acyl-CoA synthetase}}
+
{{#set: common name=palmitic acid biosynthesis|de novo lipogenesis}}
−
{{#set: ec number=EC-6.2.1.3}}
+
{{#set: reaction found=20}}
−
{{#set: gene associated=Ec-12_008720|Ec-02_006430|Ec-01_001560|Ec-03_003710}}
+
{{#set: total reaction=31}}
−
{{#set: in pathway=PWY-7094}}
+
{{#set: completion rate=65.0}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Latest revision as of 19:04, 21 March 2018

Pathway PWY-5994

  • taxonomic range:
  • common name:
    • palmitate biosynthesis I (animals and fungi)
  • Synonym(s):
    • palmitic acid biosynthesis
    • de novo lipogenesis

Reaction(s) found

20 reactions found over 31 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-5994&oldid=24360"