Difference between revisions of "Ec-11 002430"

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(→‎Collaborative curation)
(Created page with "Category:Gene == Gene Ec-11_002430 == * left end position: ** 2540443 * transcription direction: ** NEGATIVE * right end position: ** 2551554 * centisome position: ** 40.3...")
 
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== ECTOGEM description ==
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[[Category:Gene]]
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== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Gene Ec-11_002430 ==
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Model summary: [[MEDIA:ESiliculosus_final.txt|summary]]
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* left end position:
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** 2540443
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* transcription direction:
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** NEGATIVE
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* right end position:
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** 2551554
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* centisome position:
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** 40.390797   
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* Synonym(s):
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** Esi_0308_0025
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** Esi0308_0025
  
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Download '''AuReMe''' Input/Output [https://mybox.inria.fr/f/715c7378e9/?raw=1 data]
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== Reactions associated ==
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* Reaction: [[PROTEIN-KINASE-RXN]]
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The automatic reconstruction of ''Ectocarpus_Siliculosus'' results to a Genome scale [[MEDIA:ESiliculosus_final_lvl3.xml|Model]] containing 1977 reactions, 2132 metabolites, 2281 genes and 1101 pathways. This GeM was obtained based on the following sources:
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** Source: [[annotation-esiliculosus_genome]]
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* Based on annotation data:
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*** Assignment: go-term
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** Tool: [http://bioinformatics.ai.sri.com/ptools/ Pathway tools]
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== Pathways associated ==
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*** Creation of a metabolic network containing 1661 reactions
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== External links  ==
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* Based on orthology data:
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{{#set: left end position=2540443}}
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** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
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{{#set: transcription direction=NEGATIVE}}
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*** From template ''ARAGEM'' creation of a metabolic network containing: 440 reactions
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{{#set: right end position=2551554}}
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* Based on expertise:
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{{#set: centisome position=40.390797    }}
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*** 65 reaction(s) added
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{{#set: common name=Esi_0308_0025|Esi0308_0025}}
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* Based on gap-filling:
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{{#set: reaction associated=PROTEIN-KINASE-RXN}}
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** Tool: [https://pypi.python.org/pypi/meneco meneco]
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*** 85 reaction(s) added
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[[FILE:venn.png|frameless|border]]
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== Collaborative curation ==  
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* Suggest reactions to add or remove:
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** Download this [[MEDIA:Add_delete_reaction.csv|form]]
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* Suggest new reactions to create and add:
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** Download this [[MEDIA:Reaction_creator.csv|form]]
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* '''Follow the examples given in the form(s) to correctly share your suggestions'''
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* Send the filled form(s) to: gem-aureme@inria.fr
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Latest revision as of 18:59, 21 March 2018

Gene Ec-11_002430

  • left end position:
    • 2540443
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 2551554
  • centisome position:
    • 40.390797
  • Synonym(s):
    • Esi_0308_0025
    • Esi0308_0025

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-11_002430&oldid=23631"