Difference between revisions of "RIBOFLAVIN-SYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Riboflavi...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5523 PWY-5523] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 5,6-dimethylbenzimidazole biosynthesis I (aerobic)
+
** Riboflavin synthase, putative
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.9 EC-2.5.1.9]
 
* Synonym(s):
 
* Synonym(s):
−
** DMB biosynthesis I
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
  '''1''' reactions found over '''3''' reactions in the full pathway
+
* With identifiers:
−
* [[RIBOFLAVINKIN-RXN]]
+
** 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[RIBOFLAVIN]][c]
−
== Reaction(s) not found ==
+
* With common name(s):
−
* [http://metacyc.org/META/NEW-IMAGE?object=FMNREDUCT-RXN FMNREDUCT-RXN]
+
** 2 6,7-dimethyl-8-(1-D-ribityl)lumazine[c] '''+''' 1 H+[c] '''=>''' 1 5-amino-6-(D-ribitylamino)uracil[c] '''+''' 1 riboflavin[c]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8771 RXN-8771]
+
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-00_004570]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
== Pathways ==
 +
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-2}}
+
* RHEA:
−
{{#set: common name=5,6-dimethylbenzimidazole biosynthesis I (aerobic)}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20772 20772]
−
{{#set: common name=DMB biosynthesis I}}
+
* LIGAND-RXN:
−
{{#set: reaction found=1}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
−
{{#set: reaction not found=3}}
+
* UNIPROT:
−
{{#set: completion rate=33.0}}
+
** [http://www.uniprot.org/uniprot/P11998 P11998]
 +
** [http://www.uniprot.org/uniprot/P16440 P16440]
 +
** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
 +
** [http://www.uniprot.org/uniprot/O24854 O24854]
 +
** [http://www.uniprot.org/uniprot/O26237 O26237]
 +
** [http://www.uniprot.org/uniprot/P66037 P66037]
 +
** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
 +
** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
 +
** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
 +
** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
 +
** [http://www.uniprot.org/uniprot/P45273 P45273]
 +
** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
 +
** [http://www.uniprot.org/uniprot/O66529 O66529]
 +
** [http://www.uniprot.org/uniprot/Q58584 Q58584]
 +
** [http://www.uniprot.org/uniprot/O28856 O28856]
 +
** [http://www.uniprot.org/uniprot/Q01994 Q01994]
 +
** [http://www.uniprot.org/uniprot/P61714 P61714]
 +
** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
 +
** [http://www.uniprot.org/uniprot/P38145 P38145]
 +
** [http://www.uniprot.org/uniprot/Q55532 Q55532]
 +
** [http://www.uniprot.org/uniprot/P73527 P73527]
 +
** [http://www.uniprot.org/uniprot/Q44680 Q44680]
 +
** [http://www.uniprot.org/uniprot/Q44681 Q44681]
 +
** [http://www.uniprot.org/uniprot/P50854 P50854]
 +
** [http://www.uniprot.org/uniprot/P50856 P50856]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Riboflavin synthase, putative}}
 +
{{#set: ec number=EC-2.5.1.9}}
 +
{{#set: gene associated=Ec-00_004570}}
 +
{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:03, 21 March 2018

Reaction RIBOFLAVIN-SYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Riboflavin synthase, putative
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RIBOFLAVIN-SYN-RXN&oldid=24247"