Difference between revisions of "RXN-1404"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1404 RXN-1404] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/3....")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5337 PWY-5337] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1404 RXN-1404] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** stachyose biosynthesis
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** [http://enzyme.expasy.org/EC/3.5.5.1 EC-3.5.5.1]
 
* Synonym(s):
 
* Synonym(s):
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** raffinose biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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  '''1''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[2.4.1.67-RXN]]
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** 1 [[INDOLEYL-CPD]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.123-RXN 2.4.1.123-RXN]
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** 1 indole-3-acetonitrile[c] '''+''' 2 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 indole-3-acetate[c]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.82-RXN 2.4.1.82-RXN]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-01_002370]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-26_000350]]
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
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** '''2''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-5026]], indole-3-acetate biosynthesis V (bacteria and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5026 PWY-5026]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWYQT-4476]], indole glucosinolate breakdown (insect chewing induced): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4476 PWYQT-4476]
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** '''1''' reactions found over '''14''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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* ARACYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5337 PWY-5337]
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** [http://www.genome.jp/dbget-bin/www_bget?R03093 R03093]
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{{#set: taxonomic range=TAX-3398}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=stachyose biosynthesis}}
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{{#set: ec number=EC-3.5.5.1}}
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{{#set: common name=raffinose biosynthesis}}
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{{#set: gene associated=Ec-01_002370|Ec-26_000350}}
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{{#set: reaction found=1}}
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{{#set: in pathway=PWY-581|PWY-5026|PWYQT-4476}}
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{{#set: reaction not found=3}}
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{{#set: reconstruction category=orthology}}
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{{#set: completion rate=33.0}}
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{{#set: reconstruction source=orthology-aragem}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:06, 21 March 2018

Reaction RXN-1404

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-581, indole-3-acetate biosynthesis II: PWY-581
    • 2 reactions found over 14 reactions in the full pathway
  • PWY-5026, indole-3-acetate biosynthesis V (bacteria and fungi): PWY-5026
    • 1 reactions found over 1 reactions in the full pathway
  • PWYQT-4476, indole glucosinolate breakdown (insect chewing induced): PWYQT-4476
    • 1 reactions found over 14 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-1404&oldid=24599"