Difference between revisions of "DIAMINOPIMEPIM-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMEPIM-RXN DIAMINOPIMEPIM-RXN] == * direction: ** REVERSIBLE * common name: ** Diaminopimel...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMEPIM-RXN DIAMINOPIMEPIM-RXN] == |
| − | * | + | * direction: |
| − | ** | + | ** REVERSIBLE |
| − | + | ||
* common name: | * common name: | ||
| − | ** | + | ** Diaminopimelate epimerase, DapF |
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/5.1.1.7 EC-5.1.1.7] | ||
* Synonym(s): | * Synonym(s): | ||
| − | == Reaction | + | == Reaction Formula == |
| − | + | * With identifiers: | |
| − | * [[ | + | ** 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[MESO-DIAMINOPIMELATE]][c] |
| − | == | + | * With common name(s): |
| − | * [http://metacyc.org/META/NEW-IMAGE?object= | + | ** 1 L,L-diaminopimelate[c] '''<=>''' 1 meso-diaminopimelate[c] |
| − | * [http://metacyc.org/META/NEW-IMAGE?object= | + | |
| − | * [http://metacyc.org/META/NEW-IMAGE?object= | + | == Genes associated with this reaction == |
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Ec-06_009100]] | ||
| + | ** Source: [[annotation-esiliculosus_genome]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[orthology-aragem]] | ||
| + | == Pathways == | ||
| + | * [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097] | ||
| + | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY] | ||
| + | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941] | ||
| + | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-aragem]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-esiliculosus_genome]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: | + | * RHEA: |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15393 15393] |
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R02735 R02735] |
| − | {{#set: | + | * UNIPROT: |
| − | {{#set: | + | ** [http://www.uniprot.org/uniprot/Q9PMD8 Q9PMD8] |
| + | ** [http://www.uniprot.org/uniprot/Q9JV69 Q9JV69] | ||
| + | ** [http://www.uniprot.org/uniprot/P44859 P44859] | ||
| + | ** [http://www.uniprot.org/uniprot/Q58519 Q58519] | ||
| + | ** [http://www.uniprot.org/uniprot/P0A6K1 P0A6K1] | ||
| + | ** [http://www.uniprot.org/uniprot/Q51564 Q51564] | ||
| + | ** [http://www.uniprot.org/uniprot/P46814 P46814] | ||
| + | ** [http://www.uniprot.org/uniprot/O05322 O05322] | ||
| + | {{#set: direction=REVERSIBLE}} | ||
| + | {{#set: common name=Diaminopimelate epimerase, DapF}} | ||
| + | {{#set: ec number=EC-5.1.1.7}} | ||
| + | {{#set: gene associated=Ec-06_009100}} | ||
| + | {{#set: in pathway=PWY-5097|DAPLYSINESYN-PWY|PWY-2941}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 19:13, 21 March 2018
Contents
Reaction DIAMINOPIMEPIM-RXN
- direction:
- REVERSIBLE
- common name:
- Diaminopimelate epimerase, DapF
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 LL-DIAMINOPIMELATE[c] <=> 1 MESO-DIAMINOPIMELATE[c]
- With common name(s):
- 1 L,L-diaminopimelate[c] <=> 1 meso-diaminopimelate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Ec-06_009100
- Source: annotation-esiliculosus_genome
- Assignment: EC-NUMBER
- Source: orthology-aragem
- Source: annotation-esiliculosus_genome
Pathways
- PWY-5097, L-lysine biosynthesis VI: PWY-5097
- 7 reactions found over 7 reactions in the full pathway
- DAPLYSINESYN-PWY, L-lysine biosynthesis I: DAPLYSINESYN-PWY
- 6 reactions found over 9 reactions in the full pathway
- PWY-2941, L-lysine biosynthesis II: PWY-2941
- 6 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-aragem
- Tool: pantograph
- Source: orthology-aragem
- Category: annotation
- Source: annotation-esiliculosus_genome
- Tool: pathwaytools
- Source: annotation-esiliculosus_genome
External links
