Difference between revisions of "RXN-1882"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] == * direction: ** REVERSIBLE * common name: ** GDP-mannose 3,5-epimerase * ec n...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=XYLCAT-PWY XYLCAT-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** xylose degradation I
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** GDP-mannose 3,5-epimerase
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* ec number:
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** [http://enzyme.expasy.org/EC/5.1.3.18 EC-5.1.3.18]
 
* Synonym(s):
 
* Synonym(s):
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** xylose catabolism
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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  '''1''' reactions found over '''2''' reactions in the full pathway
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* With identifiers:
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* [[XYLULOKIN-RXN]]
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** 1 [[GDP-MANNOSE]][c] '''<=>''' 1 [[GDP-L-GALACTOSE]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* [http://metacyc.org/META/NEW-IMAGE?object=XYLISOM-RXN XYLISOM-RXN]
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** 1 GDP-&alpha;-D-mannose[c] '''<=>''' 1 GDP-&beta;-L-galactose[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-06_004510]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY4FS-12]], VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-12 PWY4FS-12]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY4FS-13]], extended VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-13 PWY4FS-13]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5115]], GDP-L-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5115 PWY-5115]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882]
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** '''7''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=XYLCAT-PWY XYLCAT-PWY]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11144 11144]
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{{#set: taxonomic range=TAX-4751}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00889 R00889]
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{{#set: common name=xylose degradation I}}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=xylose catabolism}}
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{{#set: common name=GDP-mannose 3,5-epimerase}}
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{{#set: reaction found=1}}
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{{#set: ec number=EC-5.1.3.18}}
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{{#set: reaction not found=2}}
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{{#set: gene associated=Ec-06_004510}}
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{{#set: completion rate=50.0}}
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{{#set: in pathway=PWY4FS-12|PWY4FS-13|PWY-5115|PWY-882}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:15, 21 March 2018

Reaction RXN-1882

  • direction:
    • REVERSIBLE
  • common name:
    • GDP-mannose 3,5-epimerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GDP-α-D-mannose[c] <=> 1 GDP-β-L-galactose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY4FS-12, VTC2 cycle: PWY4FS-12
    • 1 reactions found over 2 reactions in the full pathway
  • PWY4FS-13, extended VTC2 cycle: PWY4FS-13
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5115, GDP-L-galactose biosynthesis: PWY-5115
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-882, L-ascorbate biosynthesis I (L-galactose pathway): PWY-882
    • 7 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-1882&oldid=25570"