Difference between revisions of "RIBOSYN2-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8667 RXN-8667] == * direction: ** LEFT-TO-RIGHT * common name: ** Catalase-peroxidase haem ** c...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-330...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8667 RXN-8667] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** Catalase-peroxidase haem
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** flavin biosynthesis I (bacteria and plants)
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** catalase/peroxidase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.11.1.21 EC-1.11.1.21]
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* Synonym(s):
 
* Synonym(s):
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** riboflavin, FMN and FAD biosynthesis
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** vitamin B2 biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''9''' reactions in the full pathway
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** 1 [[Donor-H2]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''=>''' 1 [[Acceptor]][c] '''+''' 2 [[WATER]][c]
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* [[DIOHBUTANONEPSYN-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 an reduced unknown electron acceptor[c] '''+''' 1 hydrogen peroxide[c] '''=>''' 1 an oxidized unknown electron acceptor[c] '''+''' 2 H2O[c]
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*** [[Ec-27_004040]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-esiliculosus_genome]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[FADSYN-RXN]]
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* [[Ec-00_010030]]
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** 1 associated gene(s):
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** ESILICULOSUS_GENOME
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*** [[Ec-01_006670]]
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***AUTOMATED-NAME-MATCH
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** 1 reconstruction source(s) associated:
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* [[Ec-02_000470]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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* [[GTP-CYCLOHYDRO-II-RXN]]
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***AUTOMATED-NAME-MATCH
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** 2 associated gene(s):
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* [[Ec-00_008230]]
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*** [[Ec-27_004040]]
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** ESILICULOSUS_GENOME
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*** [[Ec-02_005710]]
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***AUTOMATED-NAME-MATCH
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** 2 reconstruction source(s) associated:
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* [[Ec-00_008210]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** [[orthology-aragem]]
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***AUTOMATED-NAME-MATCH
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* [[LUMAZINESYN-RXN]]
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== Pathways  ==
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Ec-27_002140]]
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* [[annotation]]:
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** 1 reconstruction source(s) associated:
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** [[pathwaytools]]:
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*** [[annotation-esiliculosus_genome]]
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*** [[esiliculosus_genome]]
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* [[RIBOFLAVIN-SYN-RXN]]
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** 1 associated gene(s):
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*** [[Ec-00_004570]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIBOFLAVINKIN-RXN]]
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** 4 associated gene(s):
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*** [[Ec-04_001490]]
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*** [[Ec-04_004280]]
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*** [[Ec-10_002950]]
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*** [[Ec-14_005260]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIBOFLAVINSYNDEAM-RXN]]
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** 1 associated gene(s):
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*** [[Ec-07_005770]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIBOFLAVINSYNREDUC-RXN]]
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** 3 associated gene(s):
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*** [[Ec-05_004210]]
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*** [[Ec-23_000290]]
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*** [[Ec-07_005770]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RIBOPHOSPHAT-RXN RIBOPHOSPHAT-RXN]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* ECOCYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R03532 R03532]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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{{#set: direction=LEFT-TO-RIGHT}}
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* ARACYC:
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{{#set: common name=Catalase-peroxidase haem}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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{{#set: common name=catalase/peroxidase}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: ec number=EC-1.11.1.21}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: gene associated=Ec-00_010030|Ec-02_000470|Ec-00_008230|Ec-00_008210}}
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{{#set: common name=flavin biosynthesis I (bacteria and plants)}}
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{{#set: in pathway=}}
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{{#set: common name=riboflavin, FMN and FAD biosynthesis|vitamin B2 biosynthesis}}
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{{#set: reconstruction category=annotation}}
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{{#set: reaction found=8}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: total reaction=9}}
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{{#set: reconstruction source=esiliculosus_genome}}
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{{#set: completion rate=89.0}}

Latest revision as of 19:05, 21 March 2018

Pathway RIBOSYN2-PWY

  • taxonomic range:
  • common name:
    • flavin biosynthesis I (bacteria and plants)
  • Synonym(s):
    • riboflavin, FMN and FAD biosynthesis
    • vitamin B2 biosynthesis

Reaction(s) found

8 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RIBOSYN2-PWY&oldid=24470"