Difference between revisions of "RXN-8642"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8665 RXN-8665] == * direction: ** LEFT-TO-RIGHT * common name: ** Indoleamine 2,3-dioxygenase *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] == * direction: ** REVERSIBLE * common name: ** isocitrate dehydrogenase (NADP+)...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8665 RXN-8665] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Indoleamine 2,3-dioxygenase
+
** isocitrate dehydrogenase (NADP+)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.13.11.11 EC-1.13.11.11]
+
−
** [http://enzyme.expasy.org/EC/1.13.11.52 EC-1.13.11.52]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** oxalsuccinic decarboxylase
 +
** isocitrate (NADP) dehydrogenase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** NADP-specific isocitrate dehydrogenase
 +
** NADP-linked isocitrate dehydrogenase
 +
** NADP isocitric dehydrogenase
 +
** isocitrate dehydrogenase (NADP-dependent)
 +
** NADP-dependent isocitric dehydrogenase
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** NADP+-linked isocitrate dehydrogenase
 +
** IDH (ambiguous)
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** NADP+-ICDH
 +
** NADP+-IDH
 +
** IDP
 +
** IDP1
 +
** IDP2
 +
** IDP3
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[TRP]][c] '''=>''' 1 [[N-FORMYLKYNURENINE]][c]
+
** 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 oxygen[c] '''+''' 1 L-tryptophan[c] '''=>''' 1 N-formylkynurenine[c]
+
** 1 oxalosuccinate[c] '''+''' 1 H+[c] '''<=>''' 1 CO2[c] '''+''' 1 2-oxoglutarate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-20_001720]]
+
* Gene: [[Ec-11_003080]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7765]], 3-hydroxy-4-methyl-anthranilate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7765 PWY-7765]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5651]], L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5651 PWY-5651]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[TRPCAT-PWY]], L-tryptophan degradation I (via anthranilate): [http://metacyc.org/META/NEW-IMAGE?object=TRPCAT-PWY TRPCAT-PWY]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6309]], L-tryptophan degradation XI (mammalian, via kynurenine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6309 PWY-6309]
 
−
** '''8''' reactions found over '''17''' reactions in the full pathway
 
−
* [[PWY-7717]], 3-hydroxy-4-methyl-anthranilate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7717 PWY-7717]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24536 24536]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00678 R00678]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
−
* UNIPROT:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P21643 P21643]
+
{{#set: common name=isocitrate dehydrogenase (NADP+)}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=oxalsuccinic decarboxylase|isocitrate (NADP) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|NADP-specific isocitrate dehydrogenase|NADP-linked isocitrate dehydrogenase|NADP isocitric dehydrogenase|isocitrate dehydrogenase (NADP-dependent)|NADP-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|NADP+-linked isocitrate dehydrogenase|IDH (ambiguous)|dual-cofactor-specific isocitrate dehydrogenase|NADP+-ICDH|NADP+-IDH|IDP|IDP1|IDP2|IDP3}}
−
{{#set: common name=Indoleamine 2,3-dioxygenase}}
+
{{#set: gene associated=Ec-11_003080}}
−
{{#set: ec number=EC-1.13.11.11}}
+
{{#set: in pathway=}}
−
{{#set: ec number=EC-1.13.11.52}}
+
−
{{#set: gene associated=Ec-20_001720}}
+
−
{{#set: in pathway=PWY-7765|PWY-5651|TRPCAT-PWY|PWY-6309|PWY-7717}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 18:59, 21 March 2018

Reaction RXN-8642

  • direction:
    • REVERSIBLE
  • common name:
    • isocitrate dehydrogenase (NADP+)
  • Synonym(s):
    • oxalsuccinic decarboxylase
    • isocitrate (NADP) dehydrogenase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • NADP-specific isocitrate dehydrogenase
    • NADP-linked isocitrate dehydrogenase
    • NADP isocitric dehydrogenase
    • isocitrate dehydrogenase (NADP-dependent)
    • NADP-dependent isocitric dehydrogenase
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • NADP+-linked isocitrate dehydrogenase
    • IDH (ambiguous)
    • dual-cofactor-specific isocitrate dehydrogenase
    • NADP+-ICDH
    • NADP+-IDH
    • IDP
    • IDP1
    • IDP2
    • IDP3

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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