Difference between revisions of "RXN-14897"

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(Created page with "Category:Gene == Gene Ec-11_002580 == * left end position: ** 2701692 * transcription direction: ** POSITIVE * right end position: ** 2707558 * centisome position: ** 42.9...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14897 RXN-14897] == * direction: ** LEFT-TO-RIGHT * common name: ** Pectin lyase fold * ec numb...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-11_002580 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14897 RXN-14897] ==
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* left end position:
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* direction:
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** 2701692
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Pectin lyase fold
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* right end position:
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* ec number:
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** 2707558
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** [http://enzyme.expasy.org/EC/4.2.2.10 EC-4.2.2.10]
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* centisome position:
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** 42.954514   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0048_0022
 
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** Esi0048_0022
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[1.14.11.2-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[Pectin]][c] '''=>''' 1 [[CPD-11241]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 a pectin[c] '''=>''' 1 4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-08_000940]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-04_001770]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-08_000930]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-18_004360]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-13_002310]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-21_001490]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-14_000190]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-12_000410]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-00_009490]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-21_003140]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-02_001170]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-08_000860]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-00_010800]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-13_002650]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-20_003100]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-02_001160]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-14_000350]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-00_006370]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-23_004040]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-25_001080]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-08_000920]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-13_002330]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-09_004260]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-09_004230]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-00_011490]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-14_004740]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-20_003120]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-21_001360]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-13_002640]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways ==
 +
* [[PWY-7243]], pectin degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7243 PWY-7243]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2701692}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=Pectin lyase fold}}
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{{#set: right end position=2707558}}
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{{#set: ec number=EC-4.2.2.10}}
−
{{#set: centisome position=42.954514    }}
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{{#set: gene associated=Ec-08_000940|Ec-04_001770|Ec-08_000930|Ec-18_004360|Ec-13_002310|Ec-21_001490|Ec-14_000190|Ec-12_000410|Ec-00_009490|Ec-21_003140|Ec-02_001170|Ec-08_000860|Ec-00_010800|Ec-13_002650|Ec-20_003100|Ec-02_001160|Ec-14_000350|Ec-00_006370|Ec-23_004040|Ec-25_001080|Ec-08_000920|Ec-13_002330|Ec-09_004260|Ec-09_004230|Ec-00_011490|Ec-14_004740|Ec-20_003120|Ec-21_001360|Ec-13_002640}}
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{{#set: common name=Esi_0048_0022|Esi0048_0022}}
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{{#set: in pathway=PWY-7243}}
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{{#set: reaction associated=1.14.11.2-RXN}}
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{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:01, 21 March 2018

Reaction RXN-14897

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pectin lyase fold
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a pectin[c] => 1 4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7243, pectin degradation I: PWY-7243
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-14897&oldid=23854"