Difference between revisions of "APIGNAR-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6035 PWY-6035] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Naringenin chalcone iso...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6035 PWY-6035] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** 2,3-cis-flavanols biosynthesis
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** Naringenin chalcone isomerase
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* ec number:
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** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6]
 
* Synonym(s):
 
* Synonym(s):
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** 2,3-cis-flavan-3-ols biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[RXN-9725]]
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** 1 [[APIGENIN]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Ec-23_001220]]
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** 1 2',4,4',6'-tetrahydroxychalcone[c] '''=>''' 1 (2S)-naringenin[c]
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*** [[Ec-12_005240]]
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*** [[Ec-12_001350]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aragem]]
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* Gene: [[Ec-00_005930]]
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== Reaction(s) not found ==
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** Source: [[orthology-aragem]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9723 RXN-9723]
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* Gene: [[Ec-05_001880]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9724 RXN-9724]
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
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** '''6''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33090}}
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* LIGAND-RXN:
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{{#set: common name=2,3-cis-flavanols biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
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{{#set: common name=2,3-cis-flavan-3-ols biosynthesis}}
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* UNIPROT:
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P11650 P11650]
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{{#set: total reaction=3}}
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** [http://www.uniprot.org/uniprot/P11651 P11651]
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{{#set: completion rate=33.0}}
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** [http://www.uniprot.org/uniprot/P41088 P41088]
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** [http://www.uniprot.org/uniprot/P14298 P14298]
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** [http://www.uniprot.org/uniprot/Q42925 Q42925]
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** [http://www.uniprot.org/uniprot/Q42926 Q42926]
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** [http://www.uniprot.org/uniprot/Q08704 Q08704]
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** [http://www.uniprot.org/uniprot/P28012 P28012]
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** [http://www.uniprot.org/uniprot/P41089 P41089]
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** [http://www.uniprot.org/uniprot/O81980 O81980]
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** [http://www.uniprot.org/uniprot/O22604 O22604]
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** [http://www.uniprot.org/uniprot/O22651 O22651]
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** [http://www.uniprot.org/uniprot/Q43754 Q43754]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Naringenin chalcone isomerase}}
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{{#set: ec number=EC-5.5.1.6}}
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{{#set: gene associated=Ec-00_005930|Ec-05_001880}}
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{{#set: in pathway=PWY-7397|PWY1F-FLAVSYN|PWY-6787}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-aragem}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:01, 21 March 2018

Reaction APIGNAR-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Naringenin chalcone isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2',4,4',6'-tetrahydroxychalcone[c] => 1 (2S)-naringenin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7397, naringenin biosynthesis (engineered): PWY-7397
    • 3 reactions found over 4 reactions in the full pathway
  • PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=APIGNAR-RXN&oldid=23897"