Difference between revisions of "Ec-27 005680"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Tryptophan synthase bet...")
(Created page with "Category:Gene == Gene Ec-27_005680 == * left end position: ** 5244299 * transcription direction: ** NEGATIVE * right end position: ** 5253548 * centisome position: ** 81.3...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] ==
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== Gene Ec-27_005680 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 5244299
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* common name:
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* transcription direction:
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** Tryptophan synthase beta subunit-like PLP-dependent enzyme
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** NEGATIVE
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** Tryptophan synthase, beta chain
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* right end position:
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** Tryptophan synthase (alpha / beta chains)
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** 5253548
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/4.2.1.20 EC-4.2.1.20]
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** 81.308136   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0000_0144
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** Esi0000_0144
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[CARBODEHYDRAT-RXN]]
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** 1 [[SER]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 L-serine[c] '''+''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''=>''' 1 L-tryptophan[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 H2O[c]
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* Reaction: [[RXN0-5224]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-24_004010]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-00_008830]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-20_002800]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-24_002360]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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* [[Ec-06_007490]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-01_012080]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-17_002680]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-27_001950]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY-241]]
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* [[PWYQT-4429]]
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* [[PWY-7117]]
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* [[PWY-7115]]
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* [[PWY-6142]]
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* [[CYANCAT-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=5244299}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10532 10532]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=5253548}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
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{{#set: centisome position=81.308136    }}
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* UNIPROT:
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{{#set: common name=Esi_0000_0144|Esi0000_0144}}
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** [http://www.uniprot.org/uniprot/P11081 P11081]
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{{#set: reaction associated=CARBODEHYDRAT-RXN|RXN0-5224}}
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** [http://www.uniprot.org/uniprot/P14671 P14671]
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{{#set: pathway associated=PWY-241|PWYQT-4429|PWY-7117|PWY-7115|PWY-6142|CYANCAT-PWY}}
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** [http://www.uniprot.org/uniprot/P13228 P13228]
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** [http://www.uniprot.org/uniprot/P18284 P18284]
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** [http://www.uniprot.org/uniprot/P43759 P43759]
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** [http://www.uniprot.org/uniprot/O84172 O84172]
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** [http://www.uniprot.org/uniprot/P11080 P11080]
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** [http://www.uniprot.org/uniprot/P16608 P16608]
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** [http://www.uniprot.org/uniprot/P18285 P18285]
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** [http://www.uniprot.org/uniprot/P16706 P16706]
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** [http://www.uniprot.org/uniprot/P12290 P12290]
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** [http://www.uniprot.org/uniprot/P42391 P42391]
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** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
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** [http://www.uniprot.org/uniprot/P12291 P12291]
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** [http://www.uniprot.org/uniprot/P42389 P42389]
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** [http://www.uniprot.org/uniprot/Q60179 Q60179]
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** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
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** [http://www.uniprot.org/uniprot/P07600 P07600]
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** [http://www.uniprot.org/uniprot/P07601 P07601]
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** [http://www.uniprot.org/uniprot/P06561 P06561]
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** [http://www.uniprot.org/uniprot/P56142 P56142]
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** [http://www.uniprot.org/uniprot/P06562 P06562]
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** [http://www.uniprot.org/uniprot/O27696 O27696]
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** [http://www.uniprot.org/uniprot/O28672 O28672]
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** [http://www.uniprot.org/uniprot/O66923 O66923]
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** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
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** [http://www.uniprot.org/uniprot/P43760 P43760]
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** [http://www.uniprot.org/uniprot/P34817 P34817]
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** [http://www.uniprot.org/uniprot/P34816 P34816]
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** [http://www.uniprot.org/uniprot/P17167 P17167]
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** [http://www.uniprot.org/uniprot/P17166 P17166]
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** [http://www.uniprot.org/uniprot/P19868 P19868]
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** [http://www.uniprot.org/uniprot/P19867 P19867]
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** [http://www.uniprot.org/uniprot/P16578 P16578]
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** [http://www.uniprot.org/uniprot/P43283 P43283]
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** [http://www.uniprot.org/uniprot/P43284 P43284]
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** [http://www.uniprot.org/uniprot/Q57011 Q57011]
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** [http://www.uniprot.org/uniprot/P31204 P31204]
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** [http://www.uniprot.org/uniprot/Q01998 Q01998]
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** [http://www.uniprot.org/uniprot/Q01997 Q01997]
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** [http://www.uniprot.org/uniprot/P34793 P34793]
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** [http://www.uniprot.org/uniprot/P42390 P42390]
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** [http://www.uniprot.org/uniprot/P50909 P50909]
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** [http://www.uniprot.org/uniprot/Q42529 Q42529]
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** [http://www.uniprot.org/uniprot/P51382 P51382]
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** [http://www.uniprot.org/uniprot/P77960 P77960]
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** [http://www.uniprot.org/uniprot/Q59992 Q59992]
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** [http://www.uniprot.org/uniprot/O22765 O22765]
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** [http://www.uniprot.org/uniprot/O04225 O04225]
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** [http://www.uniprot.org/uniprot/P25269 P25269]
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** [http://www.uniprot.org/uniprot/O64991 O64991]
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** [http://www.uniprot.org/uniprot/O05625 O05625]
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** [http://www.uniprot.org/uniprot/O13831 O13831]
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** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
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** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
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** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
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** [http://www.uniprot.org/uniprot/P00931 P00931]
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** [http://www.uniprot.org/uniprot/P00929 P00929]
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** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
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** [http://www.uniprot.org/uniprot/P0A877 P0A877]
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** [http://www.uniprot.org/uniprot/P0A879 P0A879]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Tryptophan synthase beta subunit-like PLP-dependent enzyme}}
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{{#set: common name=Tryptophan synthase, beta chain}}
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{{#set: common name=Tryptophan synthase (alpha / beta chains)}}
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{{#set: ec number=EC-4.2.1.20}}
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{{#set: gene associated=Ec-24_004010|Ec-00_008830|Ec-20_002800|Ec-24_002360|Ec-06_007490|Ec-01_012080|Ec-17_002680|Ec-27_001950}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:01, 21 March 2018

Gene Ec-27_005680

  • left end position:
    • 5244299
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 5253548
  • centisome position:
    • 81.308136
  • Synonym(s):
    • Esi_0000_0144
    • Esi0000_0144

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-27_005680&oldid=23951"