Difference between revisions of "DTMPKI-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=E-PHENYLITACONYL-COA E-PHENYLITACONYL-COA] == * smiles: ** CC(C)(C(O)C(=O)NCCC(=O)NCCSC(=O)C(CC...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidylate kinase * ec n...")
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=E-PHENYLITACONYL-COA E-PHENYLITACONYL-COA] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] ==
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* smiles:
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* direction:
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** CC(C)(C(O)C(=O)NCCC(=O)NCCSC(=O)C(CC(=O)[O-])=CC1(C=CC=CC=1))COP(=O)(OP(=O)(OCC2(C(OP([O-])(=O)[O-])C(O)C(O2)N4(C3(=C(C(N)=NC=N3)N=C4))))[O-])[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=CIZCKPNGZPENDV-UMUUVTGISA-I
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* common name:
 
* common name:
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** (E)-2-benzylidenesuccinyl-CoA
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** thymidylate kinase
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* molecular weight:
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* ec number:
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** 950.677   
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** [http://enzyme.expasy.org/EC/2.7.4.12 EC-2.7.4.12]
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** [http://enzyme.expasy.org/EC/2.7.4.13 EC-2.7.4.13]
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** [http://enzyme.expasy.org/EC/2.7.4.9 EC-2.7.4.9]
 
* Synonym(s):
 
* Synonym(s):
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** E-phenylitaconyl-CoA
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-902]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[TDP]][c] '''+''' 1 [[ADP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 ATP[c] '''+''' 1 dTMP[c] '''=>''' 1 dTDP[c] '''+''' 1 ADP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-20_004950]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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== Pathways  ==
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
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** '''14''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=50986140 50986140]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13517 13517]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=27639 27639]
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** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
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* LIGAND-CPD:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?C09818 C09818]
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** [http://www.uniprot.org/uniprot/Q57741 Q57741]
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* HMDB : HMDB12223
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** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
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{{#set: smiles=CC(C)(C(O)C(=O)NCCC(=O)NCCSC(=O)C(CC(=O)[O-])=CC1(C=CC=CC=1))COP(=O)(OP(=O)(OCC2(C(OP([O-])(=O)[O-])C(O)C(O2)N4(C3(=C(C(N)=NC=N3)N=C4))))[O-])[O-]}}
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** [http://www.uniprot.org/uniprot/P0A720 P0A720]
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{{#set: inchi key=InChIKey=CIZCKPNGZPENDV-UMUUVTGISA-I}}
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** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
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{{#set: common name=(E)-2-benzylidenesuccinyl-CoA}}
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** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
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{{#set: molecular weight=950.677    }}
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** [http://www.uniprot.org/uniprot/P33803 P33803]
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{{#set: common name=E-phenylitaconyl-CoA}}
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** [http://www.uniprot.org/uniprot/P42490 P42490]
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{{#set: consumed by=RXN-902}}
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** [http://www.uniprot.org/uniprot/P00572 P00572]
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** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
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** [http://www.uniprot.org/uniprot/P68693 P68693]
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** [http://www.uniprot.org/uniprot/P23919 P23919]
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** [http://www.uniprot.org/uniprot/P36590 P36590]
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** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
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** [http://www.uniprot.org/uniprot/O81650 O81650]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=thymidylate kinase}}
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{{#set: ec number=EC-2.7.4.12}}
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{{#set: ec number=EC-2.7.4.13}}
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{{#set: ec number=EC-2.7.4.9}}
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{{#set: gene associated=Ec-20_004950}}
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{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:04, 21 March 2018

Reaction DTMPKI-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 dTMP[c] => 1 dTDP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 14 reactions found over 17 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=DTMPKI-RXN&oldid=24340"