Difference between revisions of "GLYRIBONUCSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidylate kinase * ec n...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribo...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** thymidylate kinase
+
** phosphoribosylamine-glycine ligase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.4.12 EC-2.7.4.12]
+
** [http://enzyme.expasy.org/EC/6.3.4.13 EC-6.3.4.13]
−
** [http://enzyme.expasy.org/EC/2.7.4.13 EC-2.7.4.13]
+
−
** [http://enzyme.expasy.org/EC/2.7.4.9 EC-2.7.4.9]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[TMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 dTMP[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 dTDP[c]
+
** 1 ATP[c] '''+''' 1 glycine[c] '''+''' 1 5-phospho-β-D-ribosylamine[c] '''=>''' 1 H+[c] '''+''' 1 N1-(5-phospho-β-D-ribosyl)glycinamide[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-20_004950]]
+
* Gene: [[Ec-12_005490]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: GO-TERM
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
+
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
+
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
−
** '''14''' reactions found over '''17''' reactions in the full pathway
+
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
Line 43: Line 37:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13517 13517]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q57741 Q57741]
+
** [http://www.uniprot.org/uniprot/P07244 P07244]
−
** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
+
** [http://www.uniprot.org/uniprot/Q58347 Q58347]
−
** [http://www.uniprot.org/uniprot/P0A720 P0A720]
+
** [http://www.uniprot.org/uniprot/P12039 P12039]
−
** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
+
** [http://www.uniprot.org/uniprot/P21872 P21872]
−
** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
+
** [http://www.uniprot.org/uniprot/P15640 P15640]
−
** [http://www.uniprot.org/uniprot/P33803 P33803]
+
** [http://www.uniprot.org/uniprot/P00967 P00967]
−
** [http://www.uniprot.org/uniprot/P42490 P42490]
+
** [http://www.uniprot.org/uniprot/P16340 P16340]
−
** [http://www.uniprot.org/uniprot/P00572 P00572]
+
** [http://www.uniprot.org/uniprot/P22102 P22102]
−
** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
+
** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
−
** [http://www.uniprot.org/uniprot/P68693 P68693]
+
** [http://www.uniprot.org/uniprot/P43845 P43845]
−
** [http://www.uniprot.org/uniprot/P23919 P23919]
+
** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
−
** [http://www.uniprot.org/uniprot/P36590 P36590]
+
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
−
** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
+
** [http://www.uniprot.org/uniprot/P20772 P20772]
−
** [http://www.uniprot.org/uniprot/O81650 O81650]
+
** [http://www.uniprot.org/uniprot/P26977 P26977]
 +
** [http://www.uniprot.org/uniprot/Q59492 Q59492]
 +
** [http://www.uniprot.org/uniprot/P74232 P74232]
 +
** [http://www.uniprot.org/uniprot/Q42804 Q42804]
 +
** [http://www.uniprot.org/uniprot/P52421 P52421]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=thymidylate kinase}}
+
{{#set: common name=phosphoribosylamine-glycine ligase}}
−
{{#set: ec number=EC-2.7.4.12}}
+
{{#set: ec number=EC-6.3.4.13}}
−
{{#set: ec number=EC-2.7.4.13}}
+
{{#set: gene associated=Ec-12_005490}}
−
{{#set: ec number=EC-2.7.4.9}}
+
{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
−
{{#set: gene associated=Ec-20_004950}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 19:04, 21 March 2018

Reaction GLYRIBONUCSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoribosylamine-glycine ligase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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