Difference between revisions of "RXN-12567"

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(Created page with "Category:Gene == Gene Ec-27_004070 == * left end position: ** 3546837 * transcription direction: ** POSITIVE * right end position: ** 3548001 * centisome position: ** 54.9...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12567 RXN-12567] == * direction: ** LEFT-TO-RIGHT * common name: ** ClpP/crotonase-like domain...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-27_004070 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12567 RXN-12567] ==
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* left end position:
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* direction:
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** 3546837
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** ClpP/crotonase-like domain
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* right end position:
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** Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
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** 3548001
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** enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
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* centisome position:
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* ec number:
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** 54.990513   
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** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0000_0441
 
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** Esi0000_0441
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[4OH2OXOGLUTARALDOL-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[OH-HEXANOYL-COA]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CPD0-2121]][c]
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***automated-name-match
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* With common name(s):
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* [[KDPGALDOL-RXN]]
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** 1 (S)-3-hydroxyhexanoyl-CoA[c] '''=>''' 1 H2O[c] '''+''' 1 trans-hex-2-enoyl-CoA[c]
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** esiliculosus_genome
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***automated-name-match
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== Genes associated with this reaction  ==
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* [[RXN-13990]]
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Genes have been associated with this reaction based on different elements listed below.
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** esiliculosus_genome
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* Gene: [[Ec-16_001250]]
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***automated-name-match
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** Source: [[annotation-esiliculosus_genome]]
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== Pathways associated ==
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*** Assignment: EC-NUMBER
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* [[PWY-2221]]
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* Gene: [[Ec-14_006530]]
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* [[PWY-7310]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY-6507]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[GALACTUROCAT-PWY]]
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* Gene: [[Ec-06_001380]]
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* [[ENTNER-DOUDOROFF-PWY]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY-7562]]
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*** Assignment: EC-NUMBER
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* [[HYDROXYPRODEG-PWY]]
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* Gene: [[Ec-16_003560]]
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* [[PWY-7242]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
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** '''7''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3546837}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30549 30549]
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{{#set: right end position=3548001}}
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* LIGAND-RXN:
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{{#set: centisome position=54.990513    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R04749 R04749]
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{{#set: common name=Esi_0000_0441|Esi0000_0441}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=4OH2OXOGLUTARALDOL-RXN|KDPGALDOL-RXN|RXN-13990}}
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{{#set: common name=ClpP/crotonase-like domain}}
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{{#set: pathway associated=PWY-2221|PWY-7310|PWY-6507|GALACTUROCAT-PWY|ENTNER-DOUDOROFF-PWY|PWY-7562|HYDROXYPRODEG-PWY|PWY-7242}}
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{{#set: common name=Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ}}
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{{#set: common name=enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase}}
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{{#set: ec number=EC-4.2.1.17}}
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{{#set: gene associated=Ec-16_001250|Ec-14_006530|Ec-06_001380|Ec-16_003560}}
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{{#set: in pathway=PWY-6863}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:04, 21 March 2018

Reaction RXN-12567

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ClpP/crotonase-like domain
    • Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
    • enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (S)-3-hydroxyhexanoyl-CoA[c] => 1 H2O[c] + 1 trans-hex-2-enoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-12567&oldid=24370"