Difference between revisions of "Ec-27 004160"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOMEVALONATE-KINASE-RXN PHOSPHOMEVALONATE-KINASE-RXN] == * direction: ** REVERSIBLE * common n...")
(Created page with "Category:Gene == Gene Ec-27_004160 == * left end position: ** 3681281 * transcription direction: ** POSITIVE * right end position: ** 3687371 * centisome position: ** 57.0...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOMEVALONATE-KINASE-RXN PHOSPHOMEVALONATE-KINASE-RXN] ==
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== Gene Ec-27_004160 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 3681281
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* common name:
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* transcription direction:
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** GHMP kinase, C-terminal domain
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.7.4.2 EC-2.7.4.2]
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** 3687371
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* centisome position:
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** 57.074947   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0000_0413
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** Esi0000_0413
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** GCSL
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.8.1.4-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CPD-499]][c] '''<=>''' 1 [[CPD-641]][c] '''+''' 1 [[ADP]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 (R)-mevalonate 5-phosphate[c] '''<=>''' 1 (R)-mevalonate diphosphate[c] '''+''' 1 ADP[c]
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* Reaction: [[2-KETO-ADIPATE-DEHYDROG-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-25_002910]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
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** '''7''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Reaction: [[2OXOGLUTARATEDEH-RXN]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[2OXOGLUTDECARB-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[PYRUVDEH-RXN]]
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** Source: [[orthology-aragem]]
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** Source: [[orthology-aragem]]
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* Reaction: [[RXN-7716]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7719]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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* Reaction: [[RXN-8629]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-1132]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-1147]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
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* [[GLYCLEAV-PWY]]
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* [[PYRUVDEHYD-PWY]]
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* [[PWY-7218]]
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* [[PWY-5537]]
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* [[PWY-7384]]
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* [[PWY-5046]]
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* [[PWY-6886]]
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* [[PWY-5084]]
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* [[LYSINE-DEG1-PWY]]
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* [[PWY-7254]]
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* [[PWY-5652]]
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* [[PWY-5690]]
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* [[PWY-5482]]
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* [[PWY66-425]]
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* [[PWY66-398]]
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* [[TCA]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3681281}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16341 16341]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3687371}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03245 R03245]
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{{#set: centisome position=57.074947    }}
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* UNIPROT:
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{{#set: common name=Esi_0000_0413|Esi0000_0413|GCSL}}
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** [http://www.uniprot.org/uniprot/P24521 P24521]
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{{#set: reaction associated=1.8.1.4-RXN|2-KETO-ADIPATE-DEHYDROG-RXN|2OXOGLUTARATEDEH-RXN|2OXOGLUTDECARB-RXN|PYRUVDEH-RXN|RXN-7716|RXN-7719|RXN-8629|RXN0-1132|RXN0-1147}}
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{{#set: direction=REVERSIBLE}}
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{{#set: pathway associated=GLYCOLYSIS-TCA-GLYOX-BYPASS|GLYCLEAV-PWY|PYRUVDEHYD-PWY|PWY-7218|PWY-5537|PWY-7384|PWY-5046|PWY-6886|PWY-5084|LYSINE-DEG1-PWY|PWY-7254|PWY-5652|PWY-5690|PWY-5482|PWY66-425|PWY66-398|TCA}}
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{{#set: common name=GHMP kinase, C-terminal domain}}
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{{#set: ec number=EC-2.7.4.2}}
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{{#set: gene associated=Ec-25_002910}}
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{{#set: in pathway=PWY-922|PWY-7391}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:06, 21 March 2018

Gene Ec-27_004160

  • left end position:
    • 3681281
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3687371
  • centisome position:
    • 57.074947
  • Synonym(s):
    • Esi_0000_0413
    • Esi0000_0413
    • GCSL

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-27_004160&oldid=24545"