Difference between revisions of "IPPISOM-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GUANOSINE-5DP-3DP GUANOSINE-5DP-3DP] == * smiles: ** C(OP(=O)([O-])OP(=O)(O)[O-])C1(OC(C(O)C(OP...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] == * direction: ** REVERSIBLE * common name: ** isopentenyl-diphosphate de...")
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GUANOSINE-5DP-3DP GUANOSINE-5DP-3DP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] ==
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* smiles:
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* direction:
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** C(OP(=O)([O-])OP(=O)(O)[O-])C1(OC(C(O)C(OP(=O)([O-])OP(=O)([O-])[O-])1)N3(C=NC2(C(=O)NC(N)=NC=23)))
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** REVERSIBLE
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* inchi key:
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** InChIKey=BUFLLCUFNHESEH-UUOKFMHZSA-I
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* common name:
 
* common name:
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** ppGpp
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** isopentenyl-diphosphate delta-isomerase type 1
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* molecular weight:
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** isopentenyl-diphosphate delta-isomerase
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** 598.123   
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* ec number:
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** [http://enzyme.expasy.org/EC/5.3.3.2 EC-5.3.3.2]
 
* Synonym(s):
 
* Synonym(s):
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** guanosine tetraphosphate
 
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** guanosine 5'-diphosphate,3'-diphosphate
 
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** guanosine 3',5'-bispyrophosphate
 
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** guanosine 3',5'-bis(diphosphate)
 
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** guanosine 3'-diphosphate 5'-diphosphate
 
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** magic spot
 
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** guanosine-5',3'-tetraphosphate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[GDPPYPHOSKIN-RXN]]
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 isopentenyl diphosphate[c] '''<=>''' 1 dimethylallyl diphosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-11_001030]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-18_002690]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
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** '''7''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* DRUGBANK : DB04022
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23284 23284]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15938967 15938967]
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* LIGAND-RXN:
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* HMDB : HMDB59638
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** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
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* LIGAND-CPD:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?C01228 C01228]
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** [http://www.uniprot.org/uniprot/P15496 P15496]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/Q10132 Q10132]
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** [http://www.chemspider.com/Chemical-Structure.13082026.html 13082026]
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** [http://www.uniprot.org/uniprot/Q38929 Q38929]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q42553 Q42553]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=77828 77828]
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** [http://www.uniprot.org/uniprot/P93355 P93355]
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* BIGG : 37137
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** [http://www.uniprot.org/uniprot/O81691 O81691]
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{{#set: smiles=C(OP(=O)([O-])OP(=O)(O)[O-])C1(OC(C(O)C(OP(=O)([O-])OP(=O)([O-])[O-])1)N3(C=NC2(C(=O)NC(N)=NC=23)))}}
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** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
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{{#set: inchi key=InChIKey=BUFLLCUFNHESEH-UUOKFMHZSA-I}}
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** [http://www.uniprot.org/uniprot/O81660 O81660]
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{{#set: common name=ppGpp}}
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** [http://www.uniprot.org/uniprot/O81659 O81659]
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{{#set: molecular weight=598.123    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=guanosine tetraphosphate|guanosine 5'-diphosphate,3'-diphosphate|guanosine 3',5'-bispyrophosphate|guanosine 3',5'-bis(diphosphate)|guanosine 3'-diphosphate 5'-diphosphate|magic spot|guanosine-5',3'-tetraphosphate}}
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{{#set: common name=isopentenyl-diphosphate delta-isomerase type 1}}
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{{#set: produced by=GDPPYPHOSKIN-RXN}}
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{{#set: common name=isopentenyl-diphosphate delta-isomerase}}
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{{#set: ec number=EC-5.3.3.2}}
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{{#set: gene associated=Ec-11_001030|Ec-18_002690}}
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{{#set: in pathway=PWY-6174|PWY-6859|NONMEVIPP-PWY|PWY-7560|PWY-7391|PWY-5123|PWY-922|PWY-6383|PWY-7102|PWY-7524}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:09, 21 March 2018

Reaction IPPISOM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • isopentenyl-diphosphate delta-isomerase type 1
    • isopentenyl-diphosphate delta-isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] <=> 1 dimethylallyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6174, mevalonate pathway II (archaea): PWY-6174
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-922, mevalonate pathway I: PWY-922
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (archaea): PWY-7524
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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