Difference between revisions of "Ec-01 012040"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6370 PWY-6370] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7742 TAX-77...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16389 RXN-16389] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-coA synthet...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6370 PWY-6370] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16389 RXN-16389] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7742 TAX-7742]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** ascorbate recycling (cytosolic)
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** long chain acyl-coA synthetase
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** long chain acyl-CoA synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** vitamin C recycling (cytosolic)
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[1.6.5.4-RXN]]
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** 1 [[16-HYDROXYPALMITATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-17621]][c] '''+''' 1 [[AMP]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Ec-26_002470]]
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** 1 16-hydroxypalmitate[c] '''+''' 1 coenzyme A[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 16-hydroxypalmitoyl-CoA[c] '''+''' 1 AMP[c]
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*** [[Ec-22_003850]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-esiliculosus_genome]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aragem]]
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* Gene: [[Ec-12_008720]]
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* [[1.8.5.1-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 1 associated gene(s):
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-02_003740]]
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* Gene: [[Ec-01_001560]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[RXN-10981]]
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* Gene: [[Ec-02_006430]]
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** 0 associated gene:
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** Source: [[annotation-esiliculosus_genome]]
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** 1 reconstruction source(s) associated:
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-03_003710]]
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* [[RXN-3523]]
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** Source: [[annotation-esiliculosus_genome]]
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** 0 associated gene:
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*** Assignment: AUTOMATED-NAME-MATCH
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-321]], cutin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-321 PWY-321]
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== Reaction(s) not found ==
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** '''1''' reactions found over '''16''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10980 RXN-10980]
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* [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-3522 RXN-3522]
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** '''4''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''6''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-MAP:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?map00053 map00053]
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{{#set: common name=long chain acyl-coA synthetase}}
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{{#set: taxonomic range=TAX-7742}}
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{{#set: common name=long chain acyl-CoA synthetase}}
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{{#set: common name=ascorbate recycling (cytosolic)}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: common name=vitamin C recycling (cytosolic)}}
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{{#set: gene associated=Ec-12_008720|Ec-01_001560|Ec-02_006430|Ec-03_003710}}
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{{#set: reaction found=4}}
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{{#set: in pathway=PWY-321|PWY-6733|PWY-1121}}
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{{#set: total reaction=6}}
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{{#set: reconstruction category=annotation}}
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{{#set: completion rate=67.0}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:20, 21 March 2018

Reaction RXN-16389

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long chain acyl-coA synthetase
    • long chain acyl-CoA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 16-hydroxypalmitate[c] + 1 coenzyme A[c] + 1 ATP[c] => 1 diphosphate[c] + 1 16-hydroxypalmitoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-321, cutin biosynthesis: PWY-321
    • 1 reactions found over 16 reactions in the full pathway
  • PWY-6733, sporopollenin precursors biosynthesis: PWY-6733
    • 4 reactions found over 18 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 6 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-01_012040&oldid=17781"