Difference between revisions of "RXN0-2023"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBOSYL-ATP PHOSPHORIBOSYL-ATP] == * smiles: ** C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-CYCLODEAMINASE-RXN ORNITHINE-CYCLODEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBOSYL-ATP PHOSPHORIBOSYL-ATP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-CYCLODEAMINASE-RXN ORNITHINE-CYCLODEAMINASE-RXN] ==
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* smiles:
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* direction:
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** C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP(OP(=O)([O-])OP(=O)([O-])O)(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=RKNHJBVBFHDXGR-KEOHHSTQSA-I
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* common name:
 
* common name:
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** 1-(5-phospho-β-D-ribosyl)-ATP
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** Ornithine cyclodeaminase/mu-crystallin
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* molecular weight:
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* ec number:
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** 714.24   
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** [http://enzyme.expasy.org/EC/4.3.1.12 EC-4.3.1.12]
 
* Synonym(s):
 
* Synonym(s):
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** 1-(5-phosphoribosyl)-ATP
 
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** N1-(5-phospho-D-ribosyl)-ATP
 
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** 5-phosphoribosyl-ATP
 
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** 1-(5-phospho-D-ribosyl)-ATP
 
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** phosphoribosyl-ATP
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[HISTPRATPHYD-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[L-ORNITHINE]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[PRO]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[ATPPHOSPHORIBOSYLTRANS-RXN]]
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** 1 L-ornithine[c] '''=>''' 1 ammonium[c] '''+''' 1 L-proline[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-18_004550]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[ORN-AMINOPENTANOATE-CAT-PWY]], L-ornithine degradation I (L-proline biosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=ORN-AMINOPENTANOATE-CAT-PWY ORN-AMINOPENTANOATE-CAT-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-GLU-PWY ARG-GLU-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* DRUGBANK : DB01661
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24368 24368]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90658853 90658853]
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* LIGAND-RXN:
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* HMDB : HMDB03665
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** [http://www.genome.jp/dbget-bin/www_bget?R00671 R00671]
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* LIGAND-CPD:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?C02739 C02739]
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** [http://www.uniprot.org/uniprot/Q59701 Q59701]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P09773 P09773]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=73200 73200]
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** [http://www.uniprot.org/uniprot/P33728 P33728]
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* BIGG : 40470
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** [http://www.uniprot.org/uniprot/O68052 O68052]
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{{#set: smiles=C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP(OP(=O)([O-])OP(=O)([O-])O)(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O}}
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** [http://www.uniprot.org/uniprot/Q9WWA2 Q9WWA2]
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{{#set: inchi key=InChIKey=RKNHJBVBFHDXGR-KEOHHSTQSA-I}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=1-(5-phospho-β-D-ribosyl)-ATP}}
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{{#set: common name=Ornithine cyclodeaminase/mu-crystallin}}
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{{#set: molecular weight=714.24    }}
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{{#set: ec number=EC-4.3.1.12}}
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{{#set: common name=1-(5-phosphoribosyl)-ATP|N1-(5-phospho-D-ribosyl)-ATP|5-phosphoribosyl-ATP|1-(5-phospho-D-ribosyl)-ATP|phosphoribosyl-ATP}}
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{{#set: gene associated=Ec-18_004550}}
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{{#set: consumed by=HISTPRATPHYD-RXN}}
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{{#set: in pathway=ORN-AMINOPENTANOATE-CAT-PWY|ARG-GLU-PWY}}
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{{#set: reversible reaction associated=ATPPHOSPHORIBOSYLTRANS-RXN}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:24, 21 March 2018

Reaction ORNITHINE-CYCLODEAMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ornithine cyclodeaminase/mu-crystallin
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-ornithine[c] => 1 ammonium[c] + 1 L-proline[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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