Difference between revisions of "Ec-24 001900"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14214 RXN-14214] == * direction: ** LEFT-TO-RIGHT * common name: ** Apyrase * Synonym(s): == R...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Malate synthase * ec numb...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14214 RXN-14214] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Apyrase
+
** Malate synthase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.3.3.9 EC-2.3.3.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[DADP]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[ACETYL-COA]][c] '''+''' 1 [[GLYOX]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[MAL]][c] '''+''' 1 [[CO-A]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 dATP[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 dADP[c] '''+''' 1 phosphate[c]
+
** 1 acetyl-CoA[c] '''+''' 1 glyoxylate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 (S)-malate[c] '''+''' 1 coenzyme A[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-02_001970]]
+
* Gene: [[Ec-12_003860]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXDEG-PWY GLYOXDEG-PWY]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18181 18181]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P42450 P42450]
 +
** [http://www.uniprot.org/uniprot/Q02216 Q02216]
 +
** [http://www.uniprot.org/uniprot/P28344 P28344]
 +
** [http://www.uniprot.org/uniprot/P28345 P28345]
 +
** [http://www.uniprot.org/uniprot/P30952 P30952]
 +
** [http://www.uniprot.org/uniprot/Q43827 Q43827]
 +
** [http://www.uniprot.org/uniprot/P21826 P21826]
 +
** [http://www.uniprot.org/uniprot/P37330 P37330]
 +
** [http://www.uniprot.org/uniprot/P17432 P17432]
 +
** [http://www.uniprot.org/uniprot/P17815 P17815]
 +
** [http://www.uniprot.org/uniprot/P08997 P08997]
 +
** [http://www.uniprot.org/uniprot/P21360 P21360]
 +
** [http://www.uniprot.org/uniprot/P08216 P08216]
 +
** [http://www.uniprot.org/uniprot/P13244 P13244]
 +
** [http://www.uniprot.org/uniprot/P49081 P49081]
 +
** [http://www.uniprot.org/uniprot/P45458 P45458]
 +
** [http://www.uniprot.org/uniprot/O32913 O32913]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Apyrase}}
+
{{#set: common name=Malate synthase}}
−
{{#set: gene associated=Ec-02_001970}}
+
{{#set: ec number=EC-2.3.3.9}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Ec-12_003860}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=PWY-7295|PWY-7294|GLYOXDEG-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|PWY-7118}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:26, 21 March 2018

Reaction MALSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Malate synthase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 acetyl-CoA[c] + 1 glyoxylate[c] + 1 H2O[c] => 1 H+[c] + 1 (S)-malate[c] + 1 coenzyme A[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7295, L-arabinose degradation IV: PWY-7295
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7294, xylose degradation IV: PWY-7294
    • 3 reactions found over 7 reactions in the full pathway
  • GLYOXDEG-PWY, glycolate and glyoxylate degradation II: GLYOXDEG-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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